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Embeddings type
55
Gene expression
4
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
4
umap
Underlying Assay
10X snATAC-seq
2
sciATAC-seq
1
10X scATAC-seq
Available data
3
h5ad
2
rds
1
mtx
1
tsv
File set status
4
released
Organism
3
Homo sapiens
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3
tissue
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islet of Langerhans
1
skeletal muscle
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tissues
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2
pancreas
1
skeletal muscle tissue
1
tissues
Organ
2
pancreas
1
musculature of body
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adult
Date released
1
February, 2021
1
July, 2025
1
March, 2024
1
November, 2021
Encyclopedia version
1
fusion_consented.snatac.h5ad
Lab
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Stephen Parker, UMich
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3
AMP
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embeddings_underlying_assay!
10X snATAC-seq
Showing 4 of 4 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP