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Embeddings type
12
Gene expression
2
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
2
umap
Underlying Assay
1
10X scATAC-seq
Available data
10
h5ad
7
tsv
4
mtx
2
rds
1
bed bed3
1
cloupe
1
tbi
File set status
2
released
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
1
islet of Langerhans
1
skeletal muscle
Tissue term
1
pancreas
1
skeletal muscle tissue
Organ
1
musculature of body
1
pancreas
Life stage
1
adult
Date released
1
July, 2025
1
March, 2024
Encyclopedia version
1
fusion_consented.snatac.h5ad
Lab
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
2
AMP
RFA
1
AMP
1
AMP2
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP