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Clear Filters
Embeddings type
  • 4Accessible chromatin
  • 1Gene expression
Cohort
  • 1HPAP
Embeddings Category
  • 5umap
Underlying Assay
  • 10X scRNA-seq
  • 210X snATAC-seq
  • 110X scATAC-seq
  • 1Smart-seq
  • 1sciATAC-seq
Available data
  • 2h5ad
  • 1mtx
  • 1rds
File set status
  • 5released
Organism
  • 4Homo sapiens
Biosample type
  • 5tissue
  • 1primary cell
Biosample term
  • 4islet of Langerhans
  • 2pancreas
  • 1peripheral blood mononuclear cell
Tissue term
  • 5pancreas
  • 4heart
  • 4skeletal muscle tissue
  • 3artery
  • 2liver
  • 2lung
  • 1adipose
  • 1blood
  • 1carotid canal
  • 1hypothalamus
  • 1kidney
  • 1skeletal muscle
  • 1tissues
  • 1visceral abdominal adipose tissue
Organ
  • 5pancreas
  • 1blood
  • 1bodily fluid
Date released
  • 1August, 2021
  • 1February, 2021
  • 1June, 2025
  • 1March, 2024
  • 1October, 2024
Lab
  • 3Kyle Gaulton, UCSD
  • 1AMP-T2D consortium
  • 1Franck Mauvais-Jarvis Lab
Project
  • 3AMP
  • 1T1D
  • 1community
RFA
  • 3AMP
  • 1T1D
  • 1community
embeddings_underlying_assay!
  • 10X scRNA-seq

Showing 5 of 5 results

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  • FileSet

    DSR975305

    released

    Embeddings file set: Single cell reference map of human pancreatic islets
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR662TAR

    released

    Embeddings file set: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
    Lab: Franck Mauvais-Jarvis Lab
    Project: community
  • FileSet

    DSR827MAZ

    released

    Embeddings file set: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
    Lab: Kyle Gaulton, UCSD
    Project: AMP
  • FileSet

    DSR322WJB

    released

    Embeddings file set: Islet snATAC-seq from control samples
    Lab: Kyle Gaulton, UCSD
    Project: AMP
  • FileSet

    DSR047LET

    released

    Embeddings file set: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
    Lab: Kyle Gaulton, UCSD
    Project: T1D
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