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Embeddings type
6
Gene expression
1
Accessible chromatin
Embeddings Category
7
umap
Underlying Assay
2
10X scRNA-seq
10X snATAC-seq
2
10X snRNA-seq
1
Smart-seq
Available data
5
h5ad
3
rds
1
mtx
1
tsv
File set status
7
released
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
5
skeletal muscle
1
muscle organ
1
skeletal muscle tissue
Tissue term
3
skeletal muscle
3
skeletal muscle tissue
1
muscle organ
Organ
7
musculature of body
7
pancreas
5
connective tissue
4
adipose tissue
4
heart
4
liver
4
vasculature
3
artery
3
blood vessel
3
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2
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2
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2
epithelium
2
intestine
2
lung
2
mouth
1
bone element
1
bone marrow
1
brain
1
eye
1
large intestine
1
lymph node
1
mammary gland
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
thymus
1
tongue
1
trachea
1
uterus
Life stage
5
adult
Date released
2
July, 2025
2
May, 2022
1
April, 2025
1
February, 2025
1
June, 2025
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
5
AMP-T2D consortium
2
Stephen Parker, UMich
Project
7
AMP
RFA
5
AMP
2
AMP2
embeddings_underlying_assay!
10X snATAC-seq
Showing 7 of 7 results
table-tab-icon
matrix-icon
FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR759180
released
Embeddings file set
: Single cell reference map of human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR603575
released
Embeddings file set
: This snRNAseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024XGL
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR451YDC
released
Embeddings file set
: The human cell atlas of Muscle from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP