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Embeddings type
3
Gene expression
1
Accessible chromatin
Embeddings Category
4
umap
Underlying Assay
10X snATAC-seq
2
10X snRNA-seq
Available data
4
h5ad
1
mtx
1
tsv
File set status
4
released
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
3
skeletal muscle
1
skeletal muscle tissue
Tissue term
7
pancreas
5
heart
4
liver
4
skeletal muscle tissue
3
kidney
2
artery
2
blood
2
fat pad
2
lung
1
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1
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1
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1
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1
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1
endothelial cell
1
epithelial cell
1
eye
1
hypothalamus
1
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1
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1
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1
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1
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1
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1
muscle organ
1
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1
skeletal muscle
1
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1
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1
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1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
1
visceral abdominal adipose tissue
Organ
4
musculature of body
Life stage
3
adult
Date released
2
July, 2025
1
April, 2025
1
May, 2022
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
2
AMP-T2D consortium
2
Stephen Parker, UMich
Project
4
AMP
RFA
2
AMP
2
AMP2
embeddings_underlying_assay!
10X snATAC-seq
Showing 4 of 4 results
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matrix-icon
FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR603575
released
Embeddings file set
: This snRNAseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP