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Embeddings type
2
Gene expression
1
Accessible chromatin
Embeddings Category
3
umap
Underlying Assay
10X snATAC-seq
1
10X snRNA-seq
Available data
3
h5ad
1
mtx
1
rds
1
tsv
File set status
3
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
skeletal muscle
1
skeletal muscle tissue
Tissue term
7
pancreas
5
heart
4
liver
3
fat pad
3
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3
skeletal muscle
3
skeletal muscle tissue
2
artery
2
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2
lung
1
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1
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1
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1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
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1
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1
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1
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1
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1
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1
muscle organ
1
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1
skin of body
1
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1
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1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
1
visceral abdominal adipose tissue
Organ
3
musculature of body
Life stage
2
adult
Date released
2
July, 2025
1
May, 2022
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
Project
3
AMP
RFA
2
AMP2
1
AMP
embeddings_underlying_assay!
10X snATAC-seq
Showing 3 of 3 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP