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Embeddings type
5
Gene expression
3
Accessible chromatin
Embeddings Category
8
umap
Underlying Assay
2
10X scRNA-seq
2
10X snATAC-seq
2
10X snRNA-seq
Smart-seq
Available data
6
h5ad
3
tsv
2
mtx
2
rds
File set status
8
released
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
6
skeletal muscle
2
skeletal muscle tissue
Tissue term
6
skeletal muscle tissue
1
muscle
1
skeletal muscle
Organ
8
musculature of body
8
pancreas
4
adipose tissue
4
artery
4
blood vessel
4
connective tissue
4
liver
4
vasculature
3
heart
2
blood
2
bodily fluid
2
kidney
2
lung
1
bone element
1
brain
Life stage
5
adult
Date released
2
April, 2025
2
July, 2025
2
May, 2022
1
February, 2025
1
June, 2025
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
6
AMP-T2D consortium
2
Stephen Parker, UMich
Project
8
AMP
RFA
6
AMP
2
AMP2
embeddings_underlying_assay!
Smart-seq
Showing 8 of 8 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR759180
released
Embeddings file set
: Single cell reference map of human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR603575
released
Embeddings file set
: This snRNAseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR186384
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024XGL
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP