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Embeddings type
3
Accessible chromatin
3
Gene expression
Embeddings Category
6
umap
Underlying Assay
2
10X snATAC-seq
2
10X snRNA-seq
Available data
6
h5ad
3
tsv
2
mtx
File set status
6
released
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
4
skeletal muscle
2
skeletal muscle tissue
Tissue term
8
pancreas
6
skeletal muscle tissue
4
heart
4
liver
3
artery
2
adipose
2
blood
2
kidney
2
lung
1
blood vessel
1
carotid canal
1
fat pad
1
hypothalamus
1
leukocyte
1
muscle
1
skeletal muscle
1
tissues
1
visceral abdominal adipose tissue
Organ
6
musculature of body
Life stage
4
adult
Date released
2
April, 2025
2
July, 2025
2
May, 2022
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
4
AMP-T2D consortium
2
Stephen Parker, UMich
Project
6
AMP
RFA
4
AMP
2
AMP2
embeddings_underlying_assay!
Smart-seq
Showing 6 of 6 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR603575
released
Embeddings file set
: This snRNAseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR186384
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP