Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Embeddings type
3
Gene expression
2
Accessible chromatin
Embeddings Category
5
umap
Underlying Assay
2
10X snATAC-seq
2
10X snRNA-seq
Available data
5
h5ad
3
tsv
2
mtx
File set status
5
released
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
3
skeletal muscle
2
skeletal muscle tissue
Tissue term
9
pancreas
5
heart
5
liver
5
skeletal muscle tissue
3
artery
3
blood
3
kidney
3
lung
2
adipose
2
fat pad
1
bladder organ
1
blood vessel
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
hypothalamus
1
large intestine
1
leukocyte
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle
1
muscle organ
1
prostate gland
1
skeletal muscle
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
1
visceral abdominal adipose tissue
Organ
5
musculature of body
Life stage
3
adult
Date released
2
April, 2025
2
May, 2022
1
July, 2025
Encyclopedia version
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
4
AMP
1
AMP2
encyclopedia_version!
fusion_consented.snatac.h5ad
Showing 5 of 5 results
table-tab-icon
matrix-icon
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR603575
released
Embeddings file set
: This snRNAseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR186384
released
Embeddings file set
: This snATACseq dataset is comprised of CAD patients and controls from STARNET.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP