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Getting started
Schema
Clear Filters
Annotation type
2638
pQTL
1637
candidate regulatory elements
1308
target gene predictions
971
histone modifications
899
accessible chromatin
893
chromatin state
812
binding sites
663
gene expression
371
differential activity
174
eQTL
131
variant allelic effects
65
Fine-mapped variants
23
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
5213
cis-regulatory elements
3051
Genetic variant effects
1308
Target gene links
1034
Gene expression levels
2
Others
Annotation type Category
5080
ChIP-seq
2934
DNase-seq
2638
quantitative proteomics
518
RNA-seq
498
ATAC-seq
451
snATAC-seq
305
single cell RNA-seq
186
HiC
139
scRNA-seq
136
H3K27ac ChIP-Seq
84
snDropSeq
44
pCHi-C
23
snRNA-seq
17
Expression arrays
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
5906
bed bed3+
3522
tsv
823
bed bed9
524
bigWig
110
txt
34
bed bed9+
30
bigBed bed9
26
csv
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
10607
released
1
archived
Genome assembly (visualization)
6771
hg19
1826
GRCh38
4
hg18
Organism
10560
Homo sapiens
Biosample type
5071
tissue
2719
primary cell
2343
cell line
469
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
135
monocyte
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
64
HeLa-S3
64
endothelial cell
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
B cell
52
left lung
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
48
liver
48
thymus
47
macrophage
45
islet of Langerhans
45
right lung
43
hematopoietic multipotent progenitor cell
42
hepatocyte
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
40
smooth muscle cell
39
adipocyte
39
fibroblast
37
T cell
36
left kidney
36
natural killer cell
35
spinal cord
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
31
pancreatic ductal cell
28
regulatory T cell
26
MCF-7
25
cardiac muscle cell
25
epithelial cell of proximal tubule
25
tibial nerve
24
body of pancreas
24
pericyte cell
23
EndoC_BH1
23
T-helper 1 cell
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
foreskin keratinocyte
22
pancreas
21
T-helper 17 cell
21
glomerular endothelial cell
21
keratinocyte
21
trophoblast cell
20
breast cancer cell
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
20
subcutaneous adipose tissue
19
astrocyte
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
mesenchymal stem cell
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
pancreatic beta cell
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
muscle of trunk
17
neuron
17
omental fat pad
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
testis
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
hepatic stellate cell
16
induced pluripotent stem cell
16
layer of hippocampus
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
16
skeletal muscle satellite cell
16
skeletal muscle tissue
15
CD4-positive, alpha-beta T cell
15
GM12878
15
ascending aorta
15
cerebellum
15
dendritic cell
15
frontal cortex
15
mammary gland epithelial cell
15
neutrophil
15
pancreatic delta cell
14
H9
14
endocrine pancreas
14
prostate gland
14
putamen
14
upper lobe of left lung
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
mast cell
13
neurosphere
13
temporal lobe
12
Ammon's horn
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
glomerular visceral epithelial cell
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
endothelial cell of lymphatic vessel
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
pericyte
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skin fibroblast
10
trophoblast
10
type B pancreatic cell
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
pancreatic A cell
9
parathyroid adenoma
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
thoracic aorta
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
Organ
2905
vasculature
2853
bodily fluid
2848
blood vessel
2842
blood
2658
vein
961
epithelium
669
kidney
521
connective tissue
485
brain
386
musculature of body
heart
311
lung
301
pancreas
289
intestine
244
limb
215
embryo
204
skin of body
187
liver
174
large intestine
146
extraembryonic component
138
adipose tissue
119
stomach
109
eye
89
bone element
87
mammary gland
84
small intestine
83
artery
83
uterus
78
prostate gland
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
60
__MARKER__
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Life stage
4996
adult
1288
embryonic
463
unknown
104
child
75
newborn
57
fetal
30
postnatal
29
young adult
Date released
2636
February, 2025
2542
February, 2021
2403
September, 2022
385
May, 2021
368
February, 2024
323
November, 2021
286
September, 2023
284
June, 2020
208
May, 2026
144
May, 2020
120
August, 2021
113
March, 2020
103
January, 2022
101
October, 2022
77
January, 2020
70
March, 2023
56
January, 2021
53
February, 2020
49
May, 2022
44
November, 2022
38
May, 2024
35
August, 2017
33
July, 2025
30
March, 2024
29
February, 2023
19
April, 2020
12
October, 2019
11
November, 2019
9
August, 2018
8
May, 2019
3
November, 2020
3
September, 2018
2
April, 2019
2
January, 2018
2
January, 2025
2
March, 2026
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2521
macs
2293
r
984
chromhmm
804
encode-ccres
243
abc
136
qTLtools
126
deltasvm
117
deseq2
34
cicero
27
chicago
25
seurat
24
nospecificsoft_customcode
21
gtex_eqtl:V8
21
gtex_finemapping_eQTL:caveman
21
gtex_finemapping_eQTL:caviar
21
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
matrix-eQTL
12
deeptools
12
umitools
11
hiccups
9
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
9191
AMP-T2D consortium
388
Kyle Gaulton, UCSD
383
Bing Ren, UCSD
281
KPMP
136
Jesse Engreitz, Stanford University
98
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
4
Doug Phanstiel, UNC
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
2
Joseph Wu, Stanford
Project
9905
AMP
323
ENCODE
281
KPMP
60
T1D
19
LungMap
15
community
5
ITG
Collection Tags
2635
UK_Biobank
2391
EpiMap
1832
ChIP-Atlas
925
ENCODE
620
DGA
513
AMP
418
T1D
396
T2DKP
281
KPMP
219
BLUEPRINT
208
pyxis
174
T2DKP
174
4DN
136
GTEx
108
T2D
98
eQTLCatalogue
97
CMDGA
67
HPAP
24
FNIH_projects-heart
12
FNIH_projects-liver
12
ROADMAP
RFA
9711
AMP
323
ENCODE3
281
KPMP
194
AMP2
60
T1D
19
LungMap2
15
community
5
ITG
files.file_type!!
csv
organ_slims!
heart
Showing 25 of 10608 results
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Download
FileSet
DSR096972
released
Annotation file set
: Differentially expressed genes in pancreas for T1D vs NonDiabetic in Endothelial.
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR903749
released
Annotation file set
: Differentially expressed genes in pancreas for T2D vs NonDiabetic in Ductal.
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR816428
released
Annotation file set
: Differentially expressed genes in pancreas for T1D vs NonDiabetic in Ductal.
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR741717
released
Annotation file set
: Differentially expressed genes in pancreas for Sex in Ductal.
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR205074
released
Annotation file set
: Differentially expressed genes in pancreas for PreT2D vs NonDiabetic in Ductal.
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR164560