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Annotation type
4
eQTL
2
pQTL
Annotation Category
6
Genetic variant effects
Annotation type Category
4
RNA-seq
2
quantitative proteomics
Available data
1
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
4
cartilage tissue
1
subcutaneous adipose tissue
1
synovial joint
Organ
5
connective tissue
pancreas
1
adipose tissue
Life stage
6
adult
Date released
5
August, 2021
1
February, 2021
Software used
2473
macs
2280
r
1017
chromhmm
827
encode-ccres
236
abc
125
deltasvm
116
deseq2
106
qTLtools
26
chicago
26
nospecificsoft_customcode
25
seurat
23
gtex_eqtl:V8
23
gtex_finemapping_eQTL:caveman
23
gtex_finemapping_eQTL:caviar
23
gtex_finemapping_eQTL:dapg
19
cicero
15
limix
12
deeptools
12
hiccups
12
samtools
12
umitools
11
rasqual
9
salmon
7
matrix-eQTL
6
eigenmt
6
fastqtl
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
combined S2G strategy
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
Lab
5
ITG
1
Karen Mohlke, UNC
Project
5
ITG
1
AMP
RFA
5
ITG
1
AMP
files.file_type!
bam
month_released!
August, 2020
organ_slims!
pancreas
Showing 6 of 6 results
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Download
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR474VCE
released
Annotation file set
: eQTL of synovial tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR376WYD
released
Annotation file set
: eQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR276XRX
released
Annotation file set
: eQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR965YTD
released
Annotation file set
: METSIM RNAseq local eQTLs – all results, including non-significant cis-eQTLs
Lab:
Karen Mohlke, UNC
Project:
AMP