Assay category

1918Transcription
1792DNA binding
627DNA accessibility
97DNA methylation
343D chromatin structure
1DNA sequencing

Assay

1792ChIP-seq
1527total RNA-seq
531ATAC-seq
369single cell RNA-seq
87RNA microarray
85snATAC-seq
75WGBS
57pCHi-C
34Hi-C
21RRBS
18small RNA-seq
10MeRIP-seq
6DNase-seq
5FAIRE-seq
5GRO-seq
5STARR-seq
4Capture-C
3CRISPR genome editing followed by DNA sequencing
3snDrop-seq
2HiChIP
1CRISPR RNA-seq
1CRISPR genome editing followed by sgRNA sequencing
1CRISPRi RNA-seq
1DNAme array
1MPRA
1shRNA RNA-seq
1siRNA RNA-seq
1whole genome sequencing assay

Project

4008AMP
324HPAP
244T1D
47KPMP
19LungMap
4community
1ITG

RFA

3819AMP
324HPAP
244T1D
189AMP2
47KPMP
19LungMap2
4community
1ITG

Experiment status

4646released
1archived

Genome assembly (visualization)

2951hg19
2861GRCh38
5hg18

Organism

4631Homo sapiens

Target of assay

987histone modification
986histone
500narrow histone mark
485broad histone mark
465transcription factor
343control
105RNA binding protein
89recombinant protein
31chromatin remodeller
5nucleotide modification
4other context
4other post-translational modification

Biosample type

2602tissue
1039primary cell
603cell line
393in vitro differentiated cells
10stem cell

Organ

939pancreas
728liver
675connective tissue
489adipose tissue
455epithelium
363heart
276kidney
248brain
219vasculature
217blood vessel
159bone element
137artery
86limb
69blood
69bodily fluid
64musculature of body
57eye
41nerve
37embryo
24spleen
20lung
18vein
16skeleton
5gonad
5ovary
2intestine
2pericardium
2pituitary gland
2thymus
1adrenal gland
1bone marrow
1esophagus
1large intestine
1lymph node
1mammary gland
1skin of body
1small intestine
1spinal cord
1stomach
1urinary bladder

Life stage

2894adult
898unknown
482child
327embryonic
47newborn

Available data

3392bam
3169bigWig
1817bed narrowPeak
1601tsv
1352fastq
1042bigBed narrowPeak
398tagAlign
322bed broadPeak
bigBed broadPeak
274bed bed3+
161txt
112zippedFastqFolder
64xls
36bed bedMethyl
36bigBed bedMethyl
23bedpe bed3+
23hic
12bed bed3
8csv
7bed bedgraph
5hdf5
4tar
3cool
2ibed
1bedpe
1tagAlign bed3+
1tbi
1vcf

Platform

552Illumina HiSeq 2000
186Illumina HiSeq 2500
171Illumina NovaSeq 6000
146Illumina HiSeq 4000
98Illumina Genome Analyzer
89Illumina Genome Analyzer IIx
56Illumina NextSeq 500
38HiSeq HighOutput V4
21Illumina Genome Analyzer II
8HiSeq 1500
7MiSeq
5Illumina HiSeq X Ten
2Applied Biosystems SOLiD System 3 Plus
2Illumina Genome Analyzer I
1Illumina Genome Analyzer IIe

Run type