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Citing CMDGA
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Assay category
3
DNA accessibility
3
Transcription
Assay
3
DNase-seq
3
single cell RNA-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
GRCh38
6
hg19
Organism
6
Homo sapiens
Biosample type
3
primary cell
3
tissue
Organ
pancreas
28
epithelium
1
adipose tissue
1
brain
1
connective tissue
1
spleen
Life stage
3
adult
2
child
2
newborn
1
embryonic
Available data
6
bam
6
bigWig
6
fastq
3
bed bed3+
3
bed broadPeak
3
bed narrowPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
tsv
Platform
343
Illumina HiSeq 2000
129
Illumina HiSeq 2500
122
Illumina NovaSeq 6000
113
Illumina Genome Analyzer IIx
97
Illumina HiSeq 4000
92
Illumina Genome Analyzer
19
Illumina Genome Analyzer II
16
Illumina Genome Analyzer IIe
11
HiSeq HighOutput V4
8
HiSeq 1500
7
MiSeq
6
Illumina NextSeq 500
3
Illumina HiSeq X Ten
2
Applied Biosystems SOLiD System 3 Plus
1
Illumina Genome Analyzer I
Run type
6
paired-ended
Read length (nt)
3
36
3
75
Library insert size (nt)
2
>100
1
>150
Library made from
3
DNA
3
RNA
Date released
April, 2018
3
November, 2018
2
July, 2018
1
June, 2018
Lab
6
AMP-T2D consortium
Replication type
3
unreplicated
2
anisogenic
1
isogenic
files.file_type!
csv
month_released!
April, 2018
organ_slims!
pancreas
Showing 6 of 6 results
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Experiment
TSTSR436ZZC
released
DNase-seq
of spleen
Homo sapiens
spleen male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR521KIV
released
DNase-seq
of omental fat pad
Homo sapiens
omental fat pad female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR479BAW
released
DNase-seq
of brain
Homo sapiens
brain embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR596173
released
single cell RNA-seq
of pancreatic cell
Homo sapiens
pancreatic cell male child (5 years) and male newborn (1 month)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR739548
released
single cell RNA-seq
of mesenchymal cell
Homo sapiens
mesenchymal cell male child (5 years) and male newborn (1 month)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR189853
released
single cell RNA-seq
of pancreatic cell
Homo sapiens
pancreatic cell male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP