Search – Common Metabolic Diseases Genome Atlas

Showing 25 of 411 results

FileSet
DSR485442
released
Annotation file set: The dataset contains differentially accessible cCREs between CAD and control in human visceral fat, derived from STARNET ATAC-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR352861
released
Annotation file set: The dataset contains differentially expressed genes between CAD and control in human visceral fat, derived from STARNET RNA-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR546806
released
Annotation file set: The dataset contains gene expression levels in human visceral fat, derived from STARNET RNA-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR611486
released
Annotation file set: The dataset contains cCRE–target gene links in human visceral fat, predicted from STARNET ATAC-seq data with detailed annotation (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR388902
released
Annotation file set: The dataset contains candidate cis-regulatory elements (cCREs) in human visceral fat, derived from STARNET ATAC-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR614ZVC
released
Annotation file set: Accessible chromatin annotation of each cell type cluster identified from snRNA+snATAC profiling of human skeletal muscle - adipocyte
Lab: Stephen Parker, UMich
Project: AMP
FileSet
DSR020DGY
released
Annotation file set: Splicing Quantitative Trait Loci (sQTL) from human primary articular chondrocytes under fibronectin fragment (FN-f) performed using RNA-seq data from 101 samples.
Lab: Doug Phanstiel, UNC
Project: community
FileSet
DSR302PZQ
released
Annotation file set: Splicing Quantitative Trait Loci (sQTL) from human primary articular chondrocytes under hosphate buffer saline (PBS) resting performed using RNA-seq data from 101 samples.
Lab: Doug Phanstiel, UNC
Project: community
FileSet
DSR128SRA
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of hepatic stellate cell derived from liver snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR064ENS
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of fibroblast derived from liver snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR167PUF
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of pericyte cell derived from RV snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR912ZCS
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of fibroblast derived from RV snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR095UPL
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from RV snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR504QNL
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of pericyte cell derived from LV snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR245GWZ
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of fibroblast derived from LV snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR542XFW
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from LV snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR242BFD
released
Annotation file set: accessible chromatin annotation from scATAC-seq of Quiescent Stellate
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR972BOL
released
Annotation file set: accessible chromatin annotation from scATAC-seq of Active Stellate
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR841JDM
released
Annotation file set: Target gene annotation of open chromatin regions from promoter capture c of Human Mesenchymal Cell derived Osteoblasts (1frag and 4 frag)
Lab: Struan F.A. Grant, CHOP
Project: AMP
FileSet
DSR722BWL
released
Annotation file set: Target gene annotation of open chromatin regions from promoter capture c of Human Mesenchymal Cell derived Adipocytes (1frag and 4 frag)
Lab: Struan F.A. Grant, CHOP
Project: AMP
FileSet
DSR636NVZ
released
Annotation file set: Accessible chromatin in primary preadipocytes
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR654XDX
released
Annotation file set: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR632VXG
released
Annotation file set: Accessible chromatin of ATAC-seq of chondrocyte Proximal femoral growth plates E67
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR956OYT
released
Annotation file set: Accessible chromatin of ATAC-seq of chondrocyte Distal femoral growth plates E67
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR870XSB
released
Annotation file set: Accessible chromatin of ATAC-seq of chondrocyte Proximal tibial growth plates E67
Lab: AMP-T2D consortium
Project: AMP