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Schema
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Embeddings type
2
Gene expression
1
Accessible chromatin
Embeddings Category
3
umap
Underlying Assay
1
10X scRNA-seq
1
Smart-seq
Available data
5
h5ad
2
mtx
tsv
1
rds
File set status
3
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
skeletal muscle
1
muscle organ
Tissue term
2
skeletal muscle tissue
1
muscle organ
Organ
8
pancreas
3
blood
3
bodily fluid
3
lung
3
musculature of body
2
connective tissue
2
epithelium
2
heart
2
intestine
2
kidney
2
mouth
1
adipose tissue
1
bone element
1
bone marrow
1
eye
1
large intestine
1
liver
1
lymph node
1
mammary gland
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
thymus
1
tongue
1
trachea
1
uterus
1
vasculature
Life stage
3
adult
Date released
2
July, 2025
1
May, 2022
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
Project
3
AMP
RFA
2
AMP2
1
AMP
files.file_type!
tsv
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR451YDC
released
Embeddings file set
: The human cell atlas of Muscle from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP