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Schema
Clear Filters
Embeddings type
37
Gene expression
6
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
43
umap
Underlying Assay
33
10X scRNA-seq
28
Smart-seq
3
10X snATAC-seq
2
10X snRNA-seq
1
10X scATAC-seq
1
sciATAC-seq
Available data
43
h5ad
7
mtx
tsv
4
rds
1
bed bed3
1
cloupe
1
tbi
File set status
43
released
Organism
40
Homo sapiens
Biosample type
38
tissue
7
primary cell
Biosample term
6
islet of Langerhans
4
pancreas
3
heart
3
lung
2
kidney
2
peripheral blood mononuclear cell
2
skeletal muscle
1
bladder organ
1
blood
1
bone marrow
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
immune system
1
large intestine
1
liver
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tongue
1
trachea
1
uterus
1
vasculature
Tissue term
8
pancreas
3
blood
3
heart
3
lung
2
kidney
2
skeletal muscle tissue
1
bladder organ
1
bone marrow
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
large intestine
1
leukocyte
1
liver
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tongue
1
trachea
1
uterus
1
vasculature
Organ
8
pancreas
3
blood
3
bodily fluid
3
lung
3
musculature of body
2
connective tissue
2
epithelium
2
heart
2
intestine
2
kidney
2
mouth
1
adipose tissue
1
bone element
1
bone marrow
1
eye
1
large intestine
1
liver
1
lymph node
1
mammary gland
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
thymus
1
tongue
1
trachea
1
uterus
1
vasculature
Life stage
32
adult
Date released
29
May, 2022
2
August, 2021
2
July, 2025
2
October, 2024
2
September, 2021
1
February, 2021
1
June, 2025
1
March, 2023
1
March, 2024
1
September, 2020
1
September, 2023
Software used
1
r
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
31
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Franck Mauvais-Jarvis Lab
2
Stephen Parker, UMich
2
Xin Sun, UCSD
Project
37
AMP
2
LungMap
2
T1D
2
community
RFA
34
AMP
3
AMP2
2
LungMap2
2
T1D
2
community
files.file_type!
tsv
type!!
Experiment
Showing 7 of 43 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR843THS
released
Embeddings file set
: The human cell atlas of Skin from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR181DNL
released
Embeddings file set
: The human cell atlas of Salivary Gland from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885FKV
released
Embeddings file set
: The human cell atlas of Mammary Gland from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR956GXS
released
Embeddings file set
: The human cell atlas of Liver from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP