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Schema
Citing CMDGA
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Assay category
3
DNA binding
1
3D chromatin structure
1
DNA accessibility
Assay
3
ChIP-seq
1
FAIRE-seq
1
Hi-C
Project
5
AMP
RFA
4
AMP
1
AMP2
Experiment status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Target of assay
3
transcription factor
1
RNA binding protein
Biosample type
3
cell line
1
primary cell
1
tissue
Organ
3
liver
1
blood vessel
1
epithelium
1
pancreas
1
vasculature
1
vein
Life stage
3
child
1
adult
1
newborn
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Platform
3
Illumina Genome Analyzer
Run type
3
single-ended
Read length (nt)
3
35
Library made from
5
DNA
Date released
3
November, 2017
1
March, 2019
1
October, 2019
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
4
isogenic
1
anisogenic
files.file_type!
zippedFastqFolder
Showing 5 of 5 results
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Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR043623
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
TSTSR829588
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR665514
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
MYC
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR978069
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
POLR2A
Lab:
AMP-T2D consortium
Project:
AMP