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Annotation type
3
target gene predictions
1
accessible chromatin
1
variant allelic effects
Annotation Category
3
Target gene links
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
5
snATAC-seq
Available data
5791
bed bed3+
3509
tsv
869
bed bed9
508
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
5
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
2
csv
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
2
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic stellate cell
Organ
5
pancreas
4
epithelium
1
connective tissue
Life stage
5
adult
Date released
February, 2024
3
February, 2021
1
June, 2021
1
September, 2022
Software used
3
cicero
1
deltasvm
1
macs
Lab
5
Kyle Gaulton, UCSD
Project
5
AMP
Collection Tags
3
T2DKP
3
DGA
2
T2DKP
RFA
5
AMP
month_released!
February, 2024
Showing 5 of 5 results
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Download
FileSet
DSR236XNZ
released
Annotation file set
: pancreatic delta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR376KYK
released
Annotation file set
: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR014OEB
released
Annotation file set
: pancreatic alpha cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR884MOQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic alpha cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR364QCE
released
Annotation file set
: pancreatic stellate cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP