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Clear Filters
Annotation type
  • 3target gene predictions
  • 1accessible chromatin
  • 1variant allelic effects
Annotation Category
  • 3Target gene links
  • 1Genetic variant effects
  • 1cis-regulatory elements
Annotation type Category
  • 5snATAC-seq
Available data
  • 5791bed bed3+
  • 3509tsv
  • 869bed bed9
  • 508bigWig
  • 108txt
  • 40bigBed bed9
  • 34bed bed9+
  • 5bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
  • 2csv
File set status
  • 5released
Genome assembly (visualization)
  • 5hg19
Organism
  • 5Homo sapiens
Biosample type
  • 5primary cell
Biosample term
  • 2pancreatic alpha cell
  • 1pancreatic beta cell
  • 1pancreatic delta cell
  • 1pancreatic stellate cell
Organ
  • 5pancreas
  • 4epithelium
  • 1connective tissue
Life stage
  • 5adult
Date released
  • February, 2024
  • 3February, 2021
  • 1June, 2021
  • 1September, 2022
Software used
  • 3cicero
  • 1deltasvm
  • 1macs
Lab
  • 5Kyle Gaulton, UCSD
Project
  • 5AMP
Collection Tags
  • 3 T2DKP
  • 3DGA
  • 2T2DKP
RFA
  • 5AMP
month_released!
  • February, 2024

Showing 5 of 5 results

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  • FileSet

    DSR236XNZ

    released

    Annotation file set: pancreatic delta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
    Lab: Kyle Gaulton, UCSD
    Project: AMP
  • FileSet

    DSR376KYK

    released

    Annotation file set: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
    Lab: Kyle Gaulton, UCSD
    Project: AMP
  • FileSet

    DSR014OEB

    released

    Annotation file set: pancreatic alpha cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
    Lab: Kyle Gaulton, UCSD
    Project: AMP
  • FileSet

    DSR884MOQ

    released

    Annotation file set: Genetic variants with deltaSVM predictions in pancreatic alpha cell snATAC
    Lab: Kyle Gaulton, UCSD
    Project: AMP
  • FileSet

    DSR364QCE

    released

    Annotation file set: pancreatic stellate cell accessible chromatin annotation from snATAC
    Lab: Kyle Gaulton, UCSD
    Project: AMP
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