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Clear Filters
Embeddings type
  • 3Accessible chromatin
  • 3Gene expression
Embeddings Category
  • 6umap
Underlying Assay
  • 210X snATAC-seq
  • 210X snRNA-seq
  • 110X scRNA-seq
  • 1sciATAC-seq
Available data
  • 49h5ad
  • 8tsv
  • 6mtx
  • 6rds
File set status
  • 6released
Organism
  • 3Homo sapiens
Biosample type
  • 5tissue
Biosample term
  • 2islet of Langerhans
  • 2skeletal muscle tissue
  • 1heart
  • 1tissues
Tissue term
  • 2pancreas
  • 2skeletal muscle tissue
  • 1heart
  • 1tissues
Organ
  • 2musculature of body
  • 2pancreas
  • 1heart
Life stage
  • 1adult
Date released
  • 2May, 2022
  • 2October, 2024
  • 1February, 2023
  • 1November, 2021
Software used
  • cellranger-atac
Lab
  • 3AMP-T2D consortium
  • 2Franck Mauvais-Jarvis Lab
  • 1Bing Ren, UCSD
Project
  • 3AMP
  • 2community
  • 1ENCODE
RFA
  • 3AMP
  • 2community
  • 1ENCODE3
software_used.software.name!
  • cellranger-atac

Showing 6 of 6 results

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  • FileSet

    DSR662TAR

    released

    Embeddings file set: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
    Lab: Franck Mauvais-Jarvis Lab
    Project: community
  • FileSet

    DSR867WVO

    released

    Embeddings file set: Single cell RNA-seq data in human pancreatic islets for 52 donors
    Lab: Franck Mauvais-Jarvis Lab
    Project: community
  • FileSet

    DSR549TWY

    released

    Embeddings file set: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR493VFJ

    released

    Embeddings file set: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR384UWH

    released

    Embeddings file set: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR838CLG

    released

    Embeddings file set: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
    Lab: Bing Ren, UCSD
    Project: ENCODE
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