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Embeddings type
5
Gene expression
1
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
6
umap
Underlying Assay
5
10X scRNA-seq
1
10X scATAC-seq
Available data
49
h5ad
9
tsv
7
mtx
6
rds
1
bed bed3
1
cloupe
1
tbi
File set status
6
released
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
1
artery
1
islet of Langerhans
1
kidney
1
liver
1
skeletal muscle
1
visceral fat
Tissue term
1
blood vessel
1
fat pad
1
kidney
1
liver
1
muscle
1
pancreas
Organ
1
adipose tissue
1
artery
1
blood vessel
1
connective tissue
1
kidney
1
liver
1
musculature of body
1
pancreas
1
vasculature
Life stage
5
adult
Date released
4
February, 2025
1
March, 2024
1
September, 2023
Lab
5
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
6
AMP
RFA
6
AMP
files.file_type!!
bed bed3
Showing 6 of 6 results
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FileSet
DSR928DPD
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 60 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024XGL
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR917JBY
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR941LCB
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 140 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP