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Embeddings type
5
Gene expression
2
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
7
umap
Underlying Assay
5
10X scRNA-seq
1
10X scATAC-seq
Available data
51
h5ad
9
tsv
7
mtx
7
rds
1
bed bed3
1
cloupe
1
tbi
File set status
7
released
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
2
skeletal muscle
1
artery
1
islet of Langerhans
1
kidney
1
liver
1
visceral fat
Tissue term
1
blood vessel
1
fat pad
1
kidney
1
liver
1
pancreas
1
skeletal muscle
1
skeletal muscle tissue
Organ
2
musculature of body
1
adipose tissue
1
artery
1
blood vessel
1
connective tissue
1
kidney
1
liver
1
pancreas
1
vasculature
Life stage
6
adult
Date released
June, 2025
4
February, 2025
1
July, 2025
1
March, 2024
1
September, 2023
Encyclopedia version
1
fusion_consented.snatac.h5ad
Lab
5
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
7
AMP
RFA
6
AMP
1
AMP2
month_released!
June, 2025
Showing 7 of 7 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR928DPD
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 60 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024XGL
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR917JBY
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR941LCB
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 140 samples.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP