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Embeddings type
2
Gene expression
1
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
3
umap
Underlying Assay
1
10X scATAC-seq
1
10X scRNA-seq
Available data
38
h5ad
5
mtx
3
rds
3
tsv
1
bed bed3
1
cloupe
1
tbi
File set status
3
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
1
heart
1
islet of Langerhans
1
kidney
Tissue term
1
heart
1
kidney
1
pancreas
Organ
1
heart
1
kidney
musculature of body
1
pancreas
Life stage
1
adult
Date released
1
June, 2025
1
March, 2024
1
September, 2023
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
3
AMP
RFA
2
AMP
1
AMP2
organ_slims!
musculature of body
Showing 3 of 3 results
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FileSet
DSR445357
released
Embeddings file set
: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP