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Schema
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Embeddings type
2
Gene expression
1
Accessible chromatin
Embeddings Category
3
umap
Underlying Assay
1
10X scRNA-seq
Available data
7
h5ad
3
rds
3
tsv
2
mtx
File set status
3
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
3
skeletal muscle
Tissue term
2
skeletal muscle
1
skeletal muscle tissue
Organ
3
musculature of body
2
adipose tissue
2
artery
2
blood vessel
2
connective tissue
2
heart
2
liver
2
vasculature
1
brain
1
kidney
1
pancreas
Life stage
2
adult
Date released
1
February, 2025
1
July, 2025
1
June, 2025
Encyclopedia version
1
fusion_consented.snatac.h5ad
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
Showing 3 of 3 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR759180
released
Embeddings file set
: Single cell reference map of human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024XGL
released
Embeddings file set
: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
Lab:
AMP-T2D consortium
Project:
AMP