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Embeddings type
  • 5Gene expression
  • 1Accessible chromatin
Cohort
  • 1HPAP
Embeddings Category
  • 6umap
Underlying Assay
  • 510X scRNA-seq
  • 110X scATAC-seq
Available data
  • 48h5ad
  • 9tsv
  • 7mtx
  • 6rds
  • 1bed bed3
  • 1cloupe
  • 1tbi
File set status
  • 6released
Organism
  • 6Homo sapiens
Biosample type
  • 6tissue
Biosample term
  • 1artery
  • 1islet of Langerhans
  • 1kidney
  • 1liver
  • 1skeletal muscle
  • 1visceral fat
Tissue term
  • 1blood vessel
  • 1fat pad
  • 1kidney
  • 1liver
  • 1muscle
  • 1pancreas
Organ
  • 1adipose tissue
  • 1artery
  • 1blood vessel
  • 1connective tissue
  • 1kidney
  • 1liver
  • 1musculature of body
  • 1pancreas
  • 1vasculature
Life stage
  • 5adult
Date released
  • 4February, 2025
  • 1March, 2024
  • 1September, 2023
Lab
  • 5AMP-T2D consortium
  • 1Kyle Gaulton, UCSD
Project
  • 6AMP
RFA
  • 6AMP
software_used.software.name!
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Showing 6 of 6 results

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  • FileSet

    DSR928DPD

    released

    Embeddings file set: This single-cell dataset is comprised of CAD patients and controls from STARNET. 60 samples.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR024XGL

    released

    Embeddings file set: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR917JBY

    released

    Embeddings file set: This single-cell dataset is comprised of CAD patients and controls from STARNET. 30 samples.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR941LCB

    released

    Embeddings file set: This single-cell dataset is comprised of CAD patients and controls from STARNET. 140 samples.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR827MAZ

    released

    Embeddings file set: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
    Lab: Kyle Gaulton, UCSD
    Project: AMP
  • FileSet

    DSR772NPS

    released

    Embeddings file set: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
    Lab: AMP-T2D consortium
    Project: AMP
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