Showing 4 of 4 results

• FileSet

  DSR291812

  released

  Embeddings file set: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).

  Lab: Stephen Parker, UMich

  Project: AMP

• FileSet

  DSR445357

  released

  Embeddings file set: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.

  Lab: Kyle Gaulton, UCSD

  Project: AMP

• FileSet

  DSR827MAZ

  released

  Embeddings file set: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program

  Lab: Kyle Gaulton, UCSD

  Project: AMP

• FileSet

  DSR772NPS

  released

  Embeddings file set: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.

  Lab: AMP-T2D consortium

  Project: AMP