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Citing CMDGA
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Assay category
4
DNA binding
1
DNA accessibility
Assay
4
ChIP-seq
1
FAIRE-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Target of assay
3
transcription factor
1
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Biosample type
3
cell line
1
primary cell
1
tissue
Organ
3
liver
1
blood vessel
1
brain
1
epithelium
1
vasculature
1
vein
Life stage
3
child
1
adult
1
newborn
Available data
3228
bam
3000
bigWig
1813
bed narrowPeak
1436
tsv
1308
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Platform
3
Illumina Genome Analyzer
Run type
3
single-ended
Read length (nt)
3
35
Library made from
5
DNA
Date released
3
November, 2017
2
October, 2019
Lab
5
AMP-T2D consortium
Replication type
4
isogenic
1
anisogenic
lab.title!
Struan F.A. Grant, CHOP
month_released!
July, 2018
Showing 5 of 5 results
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Experiment
DSR479IIG
released
ChIP-seq
of medial globus pallidus
Homo sapiens
medial globus pallidus female adult (68 years) and female adult (90 years)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR829588
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR665514
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
MYC
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR978069
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
POLR2A
Lab:
AMP-T2D consortium
Project:
AMP