Search – Common Metabolic Diseases Genome Atlas

- Single Cell Browser
- Getting started
- Schema

Assay category

1917Transcription

1871DNA binding

833DNA accessibility

97DNA methylation

343D chromatin structure

1DNA sequencing

Assay

1527total RNA-seq

368single cell RNA-seq

87RNA microarray

18small RNA-seq

3CRISPR genome editing followed by DNA sequencing

1CRISPR RNA-seq

1CRISPR genome editing followed by sgRNA sequencing

1CRISPRi RNA-seq

1whole genome sequencing assay

Project

RFA

Experiment status

Genome assembly (visualization)

Organism

4915Homo sapiens

Target of assay

1017histone modification

514narrow histone mark

514transcription factor

501broad histone mark

114RNA binding protein

89recombinant protein

36chromatin remodeller

5nucleotide modification

5other post-translational modification

Biosample type

1087primary cell

394in vitro differentiated cells

Organ

684connective tissue

491adipose tissue

230blood vessel

159bone element

97musculature of body

2pituitary gland

1large intestine

1small intestine

1urinary bladder

Life stage

Available data

1817bed narrowPeak

1042bigBed narrowPeak

322bed broadPeak

285bigBed broadPeak

112zippedFastqFolder

36bed bedMethyl

36bigBed bedMethyl

1tagAlign bed3+

Platform

562Illumina HiSeq 2000

187Illumina HiSeq 2500

171Illumina NovaSeq 6000

152Illumina HiSeq 4000

142Illumina Genome Analyzer IIx