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Schema
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Assay category
1490
DNA binding
1386
Transcription
676
DNA accessibility
79
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Assay
1490
ChIP-seq
1066
total RNA-seq
438
ATAC-seq
300
single cell RNA-seq
170
DNase-seq
76
RNA microarray
64
snATAC-seq
58
WGBS
41
pCHi-C
34
Hi-C
20
RRBS
16
small RNA-seq
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Capture-C
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3361
AMP
195
HPAP
193
T1D
40
KPMP
15
LungMap
4
community
1
ITG
RFA
3204
AMP
195
HPAP
193
T1D
157
AMP2
40
KPMP
15
LungMap2
4
community
1
ITG
Experiment status
3808
released
1
archived
Genome assembly (visualization)
2470
hg19
2401
GRCh38
5
hg18
Organism
3794
Homo sapiens
Target of assay
822
histone modification
821
histone
415
narrow histone mark
405
broad histone mark
397
transcription factor
271
control
95
RNA binding protein
75
recombinant protein
26
chromatin remodeller
4
other context
4
other post-translational modification
3
nucleotide modification
Biosample type
2187
tissue
792
primary cell
507
cell line
315
in vitro differentiated cells
8
stem cell
Organ
631
liver
628
pancreas
544
connective tissue
381
adipose tissue
323
heart
317
epithelium
286
kidney
237
brain
191
vasculature
187
blood vessel
140
bone element
113
artery
102
limb
83
musculature of body
49
blood
49
bodily fluid
47
eye
36
nerve
29
embryo
21
vein
18
spleen
16
skeleton
16
ureter
15
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Life stage
2231
adult
738
unknown
412
child
382
embryonic
44
newborn
Available data
2601
bam
2425
bigWig
1453
bed narrowPeak
1184
tsv
907
fastq
827
bigBed narrowPeak
320
tagAlign
259
bed broadPeak
231
bigBed broadPeak
228
bed bed3+
136
txt
85
zippedFastqFolder
53
xls
29
bed bedMethyl
29
bigBed bedMethyl
23
hic
21
bedpe bed3+
11
bed bed3
7
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
ibed
1
tbi
1
vcf
Platform
341
Illumina HiSeq 2000
139
Illumina HiSeq 2500
118
Illumina HiSeq 4000
115
Illumina Genome Analyzer IIx
89
Illumina Genome Analyzer
71
Illumina NovaSeq 6000
43
Illumina NextSeq 500
30
HiSeq HighOutput V4
20
Illumina Genome Analyzer II
14
Illumina Genome Analyzer IIe
7
HiSeq 1500
6
MiSeq
4
Illumina HiSeq X Ten
3
Illumina Genome Analyzer I
2
Applied Biosystems SOLiD System 3 Plus
Run type
676
single-ended
317
paired-ended
53
unknown
Read length (nt)
212
36
175
101
173
100
166
76
158
50
69
51
53
8
45
75
43
40
25
90
23
43
22
98
19
49
18
28
16
16
14
26
12
102
10
27
9
35
8
91
6
25
6
33
5
24
4
32
4
41
4
44
4
61
4
94
4
151
4
200
3
67
2
37
2
38
2
74
2
150
1
20
1
70
1
72
1
97
1
105
1
125
1
140
Mapped read length (nt)
3
36
3
50
2
51
Library insert size (nt)
34
>100
19
>200
8
225-275
1
150-250
1
>150
Library made from
2388
DNA
1406
RNA
Date released
576
February, 2021
326
November, 2017
316
May, 2021
281
May, 2020
266
August, 2017
261
August, 2021
253
October, 2019
179
June, 2019
158
May, 2022
131
July, 2018
113
February, 2023
91
July, 2019
90
May, 2019
68
December, 2017
66
November, 2018
65
April, 2019
59
October, 2018
50
March, 2020
50
November, 2019
50
September, 2020
40
September, 2023
38
September, 2018
35
May, 2024
34
April, 2018
31
February, 2018
24
January, 2019
22
December, 2018
19
February, 2020
19
October, 2017
15
April, 2020
15
May, 2023
13
January, 2021
9
November, 2020
7
December, 2019
7
January, 2018
7
September, 2017
5
March, 2019
5
March, 2023
4
August, 2020
4
October, 2022
3
June, 2018
2
August, 2018
1
August, 2022
1
July, 2025
Lab
3047
AMP-T2D consortium
273
Kyle Gaulton, UCSD
195
Klaus Kaestner, Upenn
119
Katalin Susztak, Upenn
40
KPMP
35
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
31
Bing Ren, UCSD
15
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
2
Stephen Parker, UMich
1
ITG
1
Maike Sander, UCSD
Replication type
2621
unreplicated
652
isogenic
536
anisogenic
Audit category:
284
inconsistent ontology term
35
audit script error
20
inconsistent control
1
inconsistent replicate
Audit category:
67
missing controlled_by
Audit category:
45
inconsistent control read length
4
inconsistent control run_type
3
inconsistent assembly
files.read_length!
101
type!!!
Embedding
Showing 6 of 3809 results
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Experiment
DSR331UWQ
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (52 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR014SRD
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (35 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR763MHD
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (48 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR589CSM
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (40 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR647TAR
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (31 year)
Lab:
KPMP
Project:
KPMP
Experiment
DSR868PGW
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (74 years)
Lab:
KPMP
Project:
KPMP