Clear Filters

Assay category

1903Transcription
1849DNA binding
833DNA accessibility
97DNA methylation
343D chromatin structure
1DNA sequencing

Assay

1849ChIP-seq
1513total RNA-seq
531ATAC-seq
368single cell RNA-seq
212DNase-seq
87RNA microarray
85snATAC-seq
75WGBS
57pCHi-C
34Hi-C
21RRBS
18small RNA-seq
10MeRIP-seq
5FAIRE-seq
5STARR-seq
4Capture-C
4GRO-seq
3CRISPR genome editing followed by DNA sequencing
3snDrop-seq
2HiChIP
1CRISPR RNA-seq
1CRISPR genome editing followed by sgRNA sequencing
1CRISPRi RNA-seq
1DNAme array
1MPRA
1shRNA RNA-seq
1siRNA RNA-seq
1whole genome sequencing assay

Project

4255AMP
324HPAP
244T1D
47KPMP
19LungMap
4community
1ITG

RFA

4066AMP
324HPAP
244T1D
189AMP2
47KPMP
19LungMap2
4community
1ITG

Experiment status

4893released
1archived

Genome assembly (visualization)

3183hg19
3098GRCh38
4hg18

Organism

4878Homo sapiens

Target of assay

1005histone modification
1004histone
511transcription factor
506narrow histone mark
497broad histone mark
336control
114RNA binding protein
89recombinant protein
36chromatin remodeller
5nucleotide modification
5other context
5other post-translational modification

Biosample type

2778tissue
1087primary cell
654cell line
365in vitro differentiated cells
10stem cell

Organ

945pancreas
791liver
684connective tissue
523epithelium
491adipose tissue
393heart
354kidney
286brain
236vasculature
230blood vessel
159bone element
141artery
122limb
97musculature of body
69blood
69bodily fluid
61eye
43nerve
embryo
25spleen
22vein
20lung
18ureter
16skeleton
5gonad
5ovary
2intestine
2pericardium
2pituitary gland
2thymus
1adrenal gland
1bone marrow
1esophagus
1large intestine
1lymph node
1mammary gland
1skin of body
1small intestine
1spinal cord
1stomach
1urinary bladder

Life stage

2935adult
913unknown
543child
453embryonic
51newborn

Available data

3355bam
3139bigWig
1803bed narrowPeak
1586tsv
1330fastq
1042bigBed narrowPeak
398tagAlign
322bed broadPeak
285bigBed broadPeak
271bed bed3+
161txt
153zippedFastqFolder
64xls
36bed bedMethyl
36bigBed bedMethyl
23bedpe bed3+
23hic
12bed bed3
8csv
7bed bedgraph
5hdf5
4tar
3cool
2ibed
1bedpe
1tagAlign bed3+
1tbi
1vcf

Platform

558Illumina HiSeq 2000
218Illumina NovaSeq 6000
174Illumina HiSeq 2500
151Illumina HiSeq 4000
130Illumina Genome Analyzer IIx
106Illumina Genome Analyzer
60Illumina NextSeq 500
38HiSeq HighOutput V4
26Illumina Genome Analyzer II
16Illumina Genome Analyzer IIe
8HiSeq 1500
7MiSeq
5Illumina HiSeq X Ten
3Illumina Genome Analyzer I
2Applied Biosystems SOLiD System 3 Plus

Run type

898single-ended
588paired-ended
61unknown

Read length (nt)

251101
24636
231100
20476