Clear Filters

Assay category

1911Transcription
1798DNA binding
789DNA accessibility
96DNA methylation
303D chromatin structure
1DNA sequencing

Assay

1798ChIP-seq
1520total RNA-seq
523ATAC-seq
369single cell RNA-seq
176DNase-seq
87RNA microarray
85snATAC-seq
74WGBS
57pCHi-C
30Hi-C
21RRBS
18small RNA-seq
10MeRIP-seq
5FAIRE-seq
5GRO-seq
5STARR-seq
4Capture-C
3CRISPR genome editing followed by DNA sequencing
3snDrop-seq
2HiChIP
1CRISPR RNA-seq
1CRISPR genome editing followed by sgRNA sequencing
1CRISPRi RNA-seq
1DNAme array
1MPRA
1shRNA RNA-seq
1siRNA RNA-seq
1whole genome sequencing assay

Project

4164AMP
324HPAP
244T1D
47KPMP
19LungMap
4community
1ITG

RFA

3975AMP
324HPAP
244T1D
189AMP2
47KPMP
19LungMap2
4community
1ITG

Experiment status

4802released
1archived

Genome assembly (visualization)

3111hg19
3026GRCh38
5hg18

Organism

4787Homo sapiens

Target of assay

963histone
963histone modification
513transcription factor
497narrow histone mark
465broad histone mark
325control
114RNA binding protein
89recombinant protein
36chromatin remodeller
5nucleotide modification
5other context
5other post-translational modification

Biosample type

2649tissue
1088primary cell
662cell line
394in vitro differentiated cells
10stem cell

Organ

946pancreas
784liver
684connective tissue
491adipose tissue
477epithelium
393heart
354kidney
286brain
236vasculature
230blood vessel
159bone element
141artery
limb
97musculature of body
69blood
69bodily fluid
61eye
43nerve
37embryo
25spleen
22vein
20lung
18ureter
16skeleton
5gonad
5ovary
2intestine
2pericardium
2pituitary gland
2thymus
1adrenal gland
1bone marrow
1esophagus
1large intestine
1lymph node
1mammary gland
1skin of body
1small intestine
1spinal cord
1stomach
1urinary bladder

Life stage

2860adult
928unknown
543child
422embryonic
51newborn

Available data

3271bam
3072bigWig
1719bed narrowPeak
1594tsv
1345fastq
958bigBed narrowPeak
398tagAlign
286bed broadPeak
249bigBed broadPeak
238bed bed3+
161txt
112zippedFastqFolder
64xls
35bed bedMethyl
35bigBed bedMethyl
23bedpe bed3+
23hic
12bed bed3
8csv
7bed bedgraph
5hdf5
4tar
3cool
2ibed
1bedpe
1tagAlign bed3+
1tbi
1vcf

Platform

562Illumina HiSeq 2000
188Illumina HiSeq 2500
171Illumina NovaSeq 6000
152Illumina HiSeq 4000
142Illumina Genome Analyzer IIx
106Illumina Genome Analyzer
60Illumina NextSeq 500
38HiSeq HighOutput V4
26Illumina Genome Analyzer II
16Illumina Genome Analyzer IIe
8HiSeq 1500
5Illumina HiSeq X Ten
3Illumina Genome Analyzer I
2Applied Biosystems SOLiD System 3 Plus

Run type

926single-ended
535paired-ended
61unknown

Read length (nt)

26436
229100
211101
20650