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Citing CMDGA
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Assay category
5
DNA binding
1
DNA accessibility
Assay
5
ChIP-seq
1
ATAC-seq
Project
6
AMP
RFA
5
AMP
1
AMP2
Experiment status
6
released
Genome assembly (visualization)
6
hg19
3
GRCh38
Organism
6
Homo sapiens
Target of assay
3
transcription factor
2
control
Biosample type
3
cell line
3
tissue
Organ
5
liver
1
pancreas
Life stage
3
child
2
unknown
1
adult
Available data
6
fastq
5
bam
5
bigWig
3
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
1
bed broadPeak
Platform
4
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina HiSeq 2000
Run type
5
single-ended
1
paired-ended
Read length (nt)
264
36
252
101
235
100
206
50
204
76
91
51
61
8
59
75
51
40
33
90
27
43
23
98
22
49
20
16
20
28
15
26
14
27
14
102
11
25
10
35
10
91
8
41
7
24
7
33
6
200
5
32
5
151
4
44
4
61
4
94
3
67
2
37
2
38
2
70
2
74
2
97
2
150
1
20
1
30
1
69
1
72
1
99
1
105
1
110
1
125
1
140
1
147
Library made from
6
DNA
Date released
3
November, 2017
2
August, 2017
1
October, 2017
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Replication type
3
anisogenic
2
isogenic
1
unreplicated
files.read_length!
26
lab.title!
Katalin Susztak, Upenn
Showing 6 of 6 results
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Experiment
TSTSR078611
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
NR2C2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR711674
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
ZNF274
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986322
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR140792
released
ATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (41 year) and male adult (59 years)
Lab:
Stephen Parker, UMich
Project:
AMP
Experiment
TSTSR138850
released
ChIP-seq
of liver
Homo sapiens
liver
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR212220
released
ChIP-seq
of liver
Homo sapiens
liver
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP