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Citing CMDGA
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Assay category
3
DNA binding
1
Transcription
Assay
3
ChIP-seq
1
single cell RNA-seq
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
4
Homo sapiens
Target of assay
2
transcription factor
1
chromatin remodeller
1
control
Biosample type
2
in vitro differentiated cells
1
cell line
1
primary cell
Organ
2
connective tissue
1
epithelium
1
liver
1
pancreas
Life stage
2
unknown
1
adult
1
child
Available data
4
bam
4
fastq
3
bigWig
2
bed narrowPeak
1
bed bed3+
1
bigBed narrowPeak
1
tsv
Platform
2
Illumina Genome Analyzer II
1
Illumina HiSeq 2000
1
Illumina HiSeq 2500
1
Illumina HiSeq 4000
Run type
4
single-ended
1
paired-ended
Read length (nt)
264
36
252
101
235
100
206
50
204
76
91
51
61
8
59
75
51
40
33
90
27
43
23
98
22
49
20
16
20
28
15
26
14
27
14
102
11
25
10
35
10
91
8
41
7
24
7
33
6
200
5
32
5
151
4
44
4
61
4
94
3
67
2
37
2
38
2
70
2
74
2
97
2
150
1
20
1
30
1
69
1
72
1
99
1
105
1
110
1
125
1
140
1
147
Library insert size (nt)
1
>200
Library made from
3
DNA
1
RNA
Date released
2
August, 2017
1
July, 2018
1
November, 2018
Lab
4
AMP-T2D consortium
Replication type
2
anisogenic
1
isogenic
1
unreplicated
Audit category:
1
inconsistent control read length
Showing 4 of 4 results
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Experiment
TSTSR796ABI
released
Audit warning
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
ASH2L
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR887119
released
single cell RNA-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (49 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR080417
released
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
PPARG
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR182504
released
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP