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Assay category
4
DNA binding
1
Transcription
Assay
4
ChIP-seq
1
single cell RNA-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
5
Homo sapiens
Target of assay
4
chromatin remodeller
4
transcription factor
2
RNA binding protein
Biosample type
4
cell line
1
primary cell
Organ
4
blood
4
bodily fluid
Life stage
5
adult
Available data
5
bam
5
bigWig
5
fastq
4
bed narrowPeak
4
bigBed narrowPeak
1
tsv
Platform
4
Illumina HiSeq 2500
1
Illumina NextSeq 500
Run type
4
single-ended
1
paired-ended
Read length (nt)
153
36
119
76
94
100
78
50
47
40
14
27
11
25
8
101
5
75
3
35
2
32
2
74
1
30
1
72
1
151
Library insert size (nt)
1
>150
Library made from
4
DNA
1
RNA
Date released
2
December, 2018
2
January, 2019
1
July, 2018
Lab
5
AMP-T2D consortium
Replication type
44
anisogenic
10
unreplicated
5
isogenic
Audit category:
1
inconsistent control
Showing 5 of 5 results
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Experiment
TSTSR421QMO
released
ChIP-seq
of GM12878
Homo sapiens
GM12878
Target:
KDM1A
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR150EUS
released
ChIP-seq
of GM12878
Homo sapiens
GM12878
Target:
RBBP5
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR954QFA
released
ChIP-seq
of GM12878
Homo sapiens
GM12878
Target:
ASH2L
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR362FXX
released
Audit error
1
ChIP-seq
of GM12878
Homo sapiens
GM12878
Target:
HDAC2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR189853
released
single cell RNA-seq
of pancreatic cell
Homo sapiens
pancreatic cell male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP