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Clear Filters
Annotation type
  • 2accessible chromatin
  • 2target gene predictions
  • 2variant allelic effects
Annotation Category
  • 2Genetic variant effects
  • 2Target gene links
  • 2cis-regulatory elements
Annotation type Category
  • 4snATAC-seq
  • 2ATAC-seq
Available data
  • 6bed bed3+
  • 2bigWig
File set status
  • 6released
Genome assembly (visualization)
  • 6hg19
  • 4GRCh38
Organism
  • 6Homo sapiens
Biosample type
  • 6primary cell
Biosample term
  • 4smooth muscle cell of the esophagus
  • 2epithelial cell of esophagus
Organ
  • 151epithelium
  • 59connective tissue
  • 22intestine
  • 21pancreas
  • 13musculature of body
  • 11adrenal gland
  • 11skin of body
  • 11stomach
  • 10heart
  • 10lung
  • 8vasculature
  • 7mammary gland
  • 6esophagus
  • 6large intestine
  • 6liver
  • 4eye
  • 4small intestine
  • 3blood vessel
  • 3bronchus
  • 3extraembryonic component
  • 3kidney
  • 3lymphatic vessel
  • 3thyroid gland
  • 2embryo
  • 2gonad
  • 2ovary
  • 2placenta
  • 2uterus
  • 1bone element
  • 1bone marrow
  • 1prostate gland
  • 1thymus
Date released
  • 4November, 2021
  • 2February, 2024
Software used
  • 2abc
  • 2deltasvm
  • 2macs
Lab
  • 39AMP-T2D consortium
  • 6Bing Ren, UCSD
Project
  • 4ENCODE
  • 2AMP
Collection Tags
  • 4AMP
  • 4T2DKP
  • 2DGA
RFA
  • 4ENCODE3
  • 2AMP

Showing 6 of 6 results

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  • FileSet

    DSR738CKV

    released

    Annotation file set: Target gene predictions of Smooth Muscle (Esophageal Muscularis) 2 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR513MXE

    released

    Annotation file set: Target gene predictions of Smooth Muscle (Esophageal Muscularis) 1 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR279PTE

    released

    Annotation file set: Accessible chromatin annotation of Smooth Muscle (Esophageal Muscularis) 2 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR530GKX

    released

    Annotation file set: Accessible chromatin annotation of Smooth Muscle (Esophageal Muscularis) 1 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR545JGJ

    released

    Annotation file set: Variant allelic effects annotation of Esophageal epithelial cells (sub-type2) from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
  • FileSet

    DSR761QWI

    released

    Annotation file set: Variant allelic effects annotation of Esophageal epithelial cells from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
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