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Clear Filters
Annotation type
  • 4accessible chromatin
  • 1target gene predictions
  • 1variant allelic effects
Annotation Category
  • 4cis-regulatory elements
  • 1Genetic variant effects
  • 1Target gene links
Annotation type Category
  • 5snATAC-seq
  • 1ATAC-seq
Available data
  • 6bed bed3+
  • 4bigWig
File set status
  • 6released
Genome assembly (visualization)
  • 6hg19
  • 5GRCh38
Organism
  • 6Homo sapiens
Biosample type
  • 6primary cell
Biosample term
  • 3hepatocyte
  • 2endothelial cell of hepatic sinusoid
  • 1hepatic stellate cell
Organ
  • 151epithelium
  • 59connective tissue
  • 22intestine
  • 21pancreas
  • 13musculature of body
  • 11adrenal gland
  • 11skin of body
  • 11stomach
  • 10heart
  • 10lung
  • 8vasculature
  • 7mammary gland
  • 6esophagus
  • 6large intestine
  • 6liver
  • 4eye
  • 4small intestine
  • 3blood vessel
  • 3bronchus
  • 3extraembryonic component
  • 3kidney
  • 3lymphatic vessel
  • 3thyroid gland
  • 2embryo
  • 2gonad
  • 2ovary
  • 2placenta
  • 2uterus
  • 1bone element
  • 1bone marrow
  • 1prostate gland
  • 1thymus
Life stage
  • 2fetal
Date released
  • 5November, 2021
  • 1February, 2024
Software used
  • 4macs
  • 1abc
  • 1deltasvm
Lab
  • 120AMP-T2D consortium
  • 24Ines Cebola, Imperial College London
  • 6Bing Ren, UCSD
  • 6Kyle Gaulton, UCSD
  • 3Jesse Engreitz, Stanford University
  • 2Karen Mohlke, UNC
  • 2Stephen Parker, UMich
Project
  • 5ENCODE
  • 1AMP
Collection Tags
  • 5AMP
  • 5T2DKP
  • 1 T2DKP
  • 1DGA
RFA
  • 5ENCODE3
  • 1AMP

Showing 6 of 6 results

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  • FileSet

    DSR943ZIF

    released

    Annotation file set: Target gene predictions of Hepatocyte from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR084ACR

    released

    Annotation file set: Accessible chromatin annotation of Hepatocyte from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR274TCU

    released

    Annotation file set: Accessible chromatin annotation of Fetal Hepatic Stellate Cell from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR947VGN

    released

    Annotation file set: Accessible chromatin annotation of Fetal Hepatic Endothelial 2 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR698JKQ

    released

    Annotation file set: Accessible chromatin annotation of Fetal Hepatic Endothelial 1 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR179RJC

    released

    Annotation file set: Variant allelic effects annotation of Hepatocytes from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
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