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Clear Filters
Annotation type
  • 3accessible chromatin
  • 3target gene predictions
  • 1variant allelic effects
Annotation Category
  • 3Target gene links
  • 3cis-regulatory elements
  • 1Genetic variant effects
Annotation type Category
  • 4snATAC-seq
  • 3ATAC-seq
Available data
  • 7bed bed3+
  • 3bigWig
File set status
  • 7released
Genome assembly (visualization)
  • 7hg19
  • 6GRCh38
Organism
  • 7Homo sapiens
Biosample type
  • 7primary cell
Biosample term
  • 4luminal epithelial cell of mammary gland
  • 3mammary gland epithelial cell
Organ
  • 151epithelium
  • 59connective tissue
  • 22intestine
  • 21pancreas
  • 13musculature of body
  • 11adrenal gland
  • 11skin of body
  • 11stomach
  • 10heart
  • 10lung
  • 8vasculature
  • 7mammary gland
  • 6esophagus
  • 6large intestine
  • 6liver
  • 4eye
  • 4small intestine
  • 3blood vessel
  • 3bronchus
  • 3extraembryonic component
  • 3kidney
  • 3lymphatic vessel
  • 3thyroid gland
  • 2embryo
  • 2gonad
  • 2ovary
  • 2placenta
  • 2uterus
  • 1bone element
  • 1bone marrow
  • 1prostate gland
  • 1thymus
Date released
  • 6November, 2021
  • 1February, 2024
Software used
  • 3abc
  • 3macs
  • 1deltasvm
Lab
  • 77AMP-T2D consortium
  • 7Bing Ren, UCSD
  • 2Jesse Engreitz, Stanford University
  • 1Stephen Parker, UMich
Project
  • 6ENCODE
  • 1AMP
Collection Tags
  • 6AMP
  • 6T2DKP
  • 1DGA
RFA
  • 6ENCODE3
  • 1AMP

Showing 7 of 7 results

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  • FileSet

    DSR154LWM

    released

    Annotation file set: Target gene predictions of Mammary Luminal Epithelial Cell 2 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR114GRY

    released

    Annotation file set: Target gene predictions of Mammary Luminal Epithelial Cell 1 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR990AWB

    released

    Annotation file set: Target gene predictions of Mammary Epithelial from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR221MTY

    released

    Annotation file set: Accessible chromatin annotation of Mammary Luminal Epithelial Cell 2 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR245LTB

    released

    Annotation file set: Accessible chromatin annotation of Mammary Luminal Epithelial Cell 1 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR492XEZ

    released

    Annotation file set: Accessible chromatin annotation of Mammary Epithelial from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR732VXG

    released

    Annotation file set: Variant allelic effects annotation of Mammary epithelial cells from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
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