Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema
Clear Filters
Annotation type
  • 5accessible chromatin
  • 2variant allelic effects
  • 1target gene predictions
Annotation Category
  • 5cis-regulatory elements
  • 2Genetic variant effects
  • 1Target gene links
Annotation type Category
  • 7snATAC-seq
  • 1ATAC-seq
Available data
  • 8bed bed3+
  • 5bigWig
File set status
  • 8released
Genome assembly (visualization)
  • 8hg19
  • 6GRCh38
Organism
  • 8Homo sapiens
Biosample type
  • 8primary cell
Biosample term
  • 3endothelial cell of lymphatic vessel
  • 2endothelial cell of hepatic sinusoid
  • 2vascular associated smooth muscle cell
  • 1placental villus capillary endothelial cell
Organ
  • 151epithelium
  • 59connective tissue
  • 22intestine
  • 21pancreas
  • 13musculature of body
  • 11adrenal gland
  • 11skin of body
  • 11stomach
  • 10heart
  • 10lung
  • 8vasculature
  • 7mammary gland
  • 6esophagus
  • 6large intestine
  • 6liver
  • 4eye
  • 4small intestine
  • 3blood vessel
  • 3bronchus
  • 3extraembryonic component
  • 3kidney
  • 3lymphatic vessel
  • 3thyroid gland
  • 2embryo
  • 2gonad
  • 2ovary
  • 2placenta
  • 2uterus
  • 1bone element
  • 1bone marrow
  • 1prostate gland
  • 1thymus
Life stage
  • 2fetal
Date released
  • 6November, 2021
  • 2February, 2024
Software used
  • 5macs
  • 2deltasvm
  • 1abc
Lab
  • 2842AMP-T2D consortium
  • 35KPMP
  • 14Ines Cebola, Imperial College London
  • 8Bing Ren, UCSD
  • 7Kyle Gaulton, UCSD
  • 3Jesse Engreitz, Stanford University
  • 3Xin Sun, UCSD
  • 1Stephen Parker, UMich
Project
  • 6ENCODE
  • 2AMP
Collection Tags
  • 6AMP
  • 6T2DKP
  • 2DGA
RFA
  • 6ENCODE3
  • 2AMP

Showing 8 of 8 results

table-tab-iconmatrix-icon

  • FileSet

    DSR451QZS

    released

    Annotation file set: Target gene predictions of Lymphatic Endothelial Cell from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR427DYD

    released

    Annotation file set: Accessible chromatin annotation of Lymphatic Endothelial Cell from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR093JYI

    released

    Annotation file set: Accessible chromatin annotation of Fetal Lymphatic Endothelial Cell from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR100TUS

    released

    Annotation file set: Accessible chromatin annotation of Fetal Placental Endothelial Cell from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR947VGN

    released

    Annotation file set: Accessible chromatin annotation of Fetal Hepatic Endothelial 2 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR698JKQ

    released

    Annotation file set: Accessible chromatin annotation of Fetal Hepatic Endothelial 1 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR963XVP

    released

    Annotation file set: Variant allelic effects annotation of Vascular smooth muscle cells (sub-type2) from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
  • FileSet

    DSR265TNH

    released

    Annotation file set: Variant allelic effects annotation of Vascular smooth muscle cells from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego