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Annotation type
3
chromatin state
1
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
3
ChIP-seq
2
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
4
endothelial cell
1
endothelial cell of umbilical vein
1
keratinocyte
1
mammary epithelial cell
Organ
17
musculature of body
12
connective tissue
7
epithelium
6
brain
4
intestine
3
large intestine
2
blood
2
bodily fluid
2
liver
1
adipose tissue
1
blood vessel
1
embryo
1
lung
1
mammary gland
1
pancreas
1
skin of body
1
small intestine
1
stomach
1
vasculature
1
vein
Date released
3
August, 2017
3
February, 2024
1
October, 2022
Software used
3
chromhmm
1
deeptools
1
eigenmt
1
macs
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
495
AMP-T2D consortium
155
KPMP
151
Bing Ren, UCSD
87
Kyle Gaulton, UCSD
24
Ines Cebola, Imperial College London
20
Katalin Susztak, Upenn
10
Jesse Engreitz, Stanford University
7
Stephen Parker, UMich
7
Xin Sun, UCSD
2
Anna Gloyn, Oxford
Project
7
AMP
Collection Tags
4
T2DKP
4
DGA
RFA
4
AMP2
3
AMP
Showing 7 of 7 results
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FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR926942
released
Annotation file set
: ChromHMM 13-state model for NHEK
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR000759
released
Annotation file set
: ChromHMM 13-state model for endothelial cell of umbilical vein
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR538274
released
Annotation file set
: ChromHMM 13-state model for HMEC
Lab:
Stephen Parker, UMich
Project:
AMP