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Clear Filters
Annotation type
  • 2caQTL
  • 1accessible chromatin
Annotation Category
  • 2Genetic variant effects
  • 1cis-regulatory elements
Annotation type Category
  • 3ATAC-seq
Available data
  • 3bed bed3+
File set status
  • 3released
Genome assembly (visualization)
  • 3GRCh38
  • 1hg19
Organism
  • 3Homo sapiens
Biosample type
  • 3primary cell
Biosample term
  • 3CD4-positive helper T cell
Date released
  • 2October, 2022
  • 1February, 2024
Software used
  • 2matrix-eQTL
  • 1bedops
  • 1pepatac
Lab
  • 9469AMP-T2D consortium
  • 393Bing Ren, UCSD
  • 281KPMP
  • 182Kyle Gaulton, UCSD
  • 139Jesse Engreitz, Stanford University
  • 60Stephen Parker, UMich
  • 53Katalin Susztak, Upenn
  • 24Ines Cebola, Imperial College London
  • 19Xin Sun, UCSD
  • 9Anna Gloyn, Oxford
  • 8Struan F.A. Grant, CHOP
  • 5ITG
  • 5Patrick T. Ellinor, Broad
  • 4Doug Phanstiel, UNC
  • 3Karen Mohlke, UNC
  • 3Stephen S. Rich Lab @UVA
Project
  • 3T1D
Collection Tags
  • 3T1D
RFA
  • 3T1D
software_used.software.name!
  • rasqual

Showing 3 of 3 results

table-tab-iconmatrix-icon

  • FileSet

    DSR077VUE

    released

    Annotation file set: full cis-caQTL stats for 10 T1D-associated regions
    Lab: Stephen S. Rich Lab @UVA
    Project: T1D
  • FileSet

    DSR578KNM

    released

    Annotation file set: nominally significant results from cis-caQTL scan
    Lab: Stephen S. Rich Lab @UVA
    Project: T1D
  • FileSet

    DSR204EGG

    released

    Annotation file set: A canonical set of CD4+ T cell peaks
    Lab: Stephen S. Rich Lab @UVA
    Project: T1D
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