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Getting started
Schema
Clear Filters
Annotation type
2638
pQTL
1707
candidate regulatory elements
1183
target gene predictions
977
histone modifications
939
chromatin state
876
accessible chromatin
811
binding sites
611
gene expression
484
differential activity
173
eQTL
85
variant allelic effects
74
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
5311
cis-regulatory elements
3015
Genetic variant effects
1183
Target gene links
1095
Gene expression levels
2
Others
Annotation type Category
5235
ChIP-seq
3062
DNase-seq
2638
quantitative proteomics
501
RNA-seq
498
ATAC-seq
384
snATAC-seq
281
single cell RNA-seq
147
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
47
pCHi-C
16
Expression arrays
15
HiC
13
snRNA-seq
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
5791
bed bed3+
3489
tsv
869
bed bed9
508
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
12
bed bed3
12
bed narrowPeak
5
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
2
csv
File set status
10604
released
1
archived
1
revoked
Genome assembly (visualization)
6695
hg19
1705
GRCh38
4
hg18
Organism
10558
Homo sapiens
Biosample type
5266
tissue
2712
primary cell
2184
cell line
438
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
135
monocyte
92
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
66
endothelial cell
63
small intestine
62
A549
62
adrenal gland
60
placenta
59
B cell
58
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
52
macrophage
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
48
liver
48
thymus
45
right lung
44
islet of Langerhans
44
natural killer cell
43
T cell
43
hematopoietic multipotent progenitor cell
42
right kidney
42
smooth muscle cell
41
adipocyte
40
renal cortex interstitium
40
renal pelvis
40
retina
39
fibroblast
36
left kidney
35
spinal cord
34
cardiac muscle cell
34
heart left ventricle
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
31
hepatocyte
26
MCF-7
25
K562
25
epithelial cell of proximal tubule
25
tibial nerve
24
body of pancreas
24
pancreatic ductal cell
24
pericyte cell
23
EndoC_BH1
23
neuron
23
regulatory T cell
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
dendritic cell
22
foreskin keratinocyte
22
pancreas
21
glomerular endothelial cell
21
trophoblast cell
20
breast cancer cell
20
coronary artery
20
keratinocyte
20
mononuclear cell
20
ovary
20
psoas muscle
20
subcutaneous adipose tissue
19
endothelial cell of lymphatic vessel
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
pigmented layer of retina
19
right atrium auricular region
18
T-helper 1 cell
18
embryonic stem cell
18
gastrocnemius medialis
18
pericyte
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
H1-hESC
17
HepG2
17
T-helper 17 cell
17
astrocyte
17
mast cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
testis
16
T-helper 2 cell
16
chorionic villus
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
hepatic stellate cell
16
induced pluripotent stem cell
16
layer of hippocampus
16
mesenchymal stem cell
16
pancreatic alpha cell
16
pancreatic beta cell
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
16
skeletal muscle tissue
15
CD4-positive, alpha-beta T cell
15
ascending aorta
15
cerebellum
15
endocardial cell
15
frontal cortex
15
neutrophil
14
endocrine pancreas
14
mammary gland epithelial cell
14
pancreatic acinar cell
14
prostate gland
14
putamen
14
skeletal muscle satellite cell
14
upper lobe of left lung
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
13
pancreatic delta cell
13
temporal lobe
12
Ammon's horn
12
HeLa-S3
12
excitatory neuron
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
neuronal stem cell
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
glomerular visceral epithelial cell
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
right renal cortex interstitium
10
skin fibroblast
10
trophoblast
9
GM12878
9
H9
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
thoracic aorta
8
type B pancreatic cell
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
Organ
2889
vasculature
2834
blood vessel
2825
bodily fluid
2814
blood
2658
vein
885
epithelium
668
kidney
505
connective tissue
484
brain
372
musculature of body
366
heart
310
lung
283
intestine
276
pancreas
244
limb
203
skin of body
171
large intestine
164
embryo
159
liver
146
extraembryonic component
138
adipose tissue
117
stomach
108
eye
89
bone element
86
mammary gland
84
small intestine
83
artery
77
prostate gland
73
placenta
72
adrenal gland
64
penis
64
ureter
62
lymph node
60
__MARKER__
50
gonad
49
thymus
43
esophagus
43
spinal cord
34
spleen
32
uterus
26
testis
25
nerve
24
lymphatic vessel
23
lymphoid tissue
23
ovary
22
thyroid gland
19
mouth
18
skeleton
15
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Life stage
5020
adult
1385
embryonic
444
unknown
115
child
75
newborn
65
fetal
32
young adult
30
postnatal
Date released
2636
February, 2025
2590
February, 2021
2511
September, 2022
389
May, 2021
February, 2024
333
November, 2021
320
May, 2026
289
June, 2020
286
September, 2023
155
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
101
October, 2022
89
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2504
macs
2320
r
1030
chromhmm
837
encode-ccres
250
abc
134
qTLtools
117
deseq2
80
deltasvm
36
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
15
limix
14
hiccups
12
matrix-eQTL
11
rasqual
8
fastqtl
6
eigenmt
6
samtools
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
9190
AMP-T2D consortium
479
Kyle Gaulton, UCSD
340
Bing Ren, UCSD
281
KPMP
139
Jesse Engreitz, Stanford University
69
Stephen Parker, UMich
53
Katalin Susztak, Upenn
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
4
Karen Mohlke, UNC
2
Stephen S. Rich Lab @UVA
Project
9892
AMP
333
ENCODE
281
KPMP
59
T1D
19
LungMap
17
community
5
ITG
Collection Tags
2635
UK_Biobank
2498
EpiMap
1848
ChIP-Atlas
965
ENCODE
535
DGA
495
AMP
395
T1D
394
T2DKP
320
pyxis
281
KPMP
194
BLUEPRINT
151
GTEx
136
T2DKP
111
T2D
101
eQTLCatalogue
93
CMDGA
55
HPAP
26
FNIH_projects-heart
12
FNIH_projects-liver
12
ROADMAP
RFA
9749
AMP
333
ENCODE3
281
KPMP
143
AMP2
59
T1D
19
LungMap2
17
community