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Schema
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Assay category
1918
Transcription
1856
DNA binding
825
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Assay
1856
ChIP-seq
1527
total RNA-seq
523
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
85
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4270
AMP
324
HPAP
244
T1D
47
KPMP
19
LungMap
4
community
1
ITG
RFA
4082
AMP
324
HPAP
244
T1D
188
AMP2
47
KPMP
19
LungMap2
4
community
1
ITG
Experiment status
4908
released
1
archived
Genome assembly (visualization)
3200
hg19
3114
GRCh38
5
hg18
Organism
4893
Homo sapiens
Target of assay
1005
histone modification
1004
histone
514
transcription factor
512
narrow histone mark
491
broad histone mark
340
control
114
RNA binding protein
89
recombinant protein
36
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Biosample type
2755
tissue
1088
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
941
pancreas
791
liver
683
connective tissue
490
adipose tissue
477
epithelium
393
heart
354
kidney
270
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
97
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Life stage
2928
adult
935
unknown
543
child
453
embryonic
51
newborn
Available data
3377
bam
3155
bigWig
1805
bed narrowPeak
1601
tsv
1335
fastq
1036
bigBed narrowPeak
384
tagAlign
318
bed broadPeak
285
bigBed broadPeak
274
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tbi
1
vcf
Platform
554
Illumina HiSeq 2000
187
Illumina HiSeq 2500
171
Illumina NovaSeq 6000
149
Illumina HiSeq 4000
141
Illumina Genome Analyzer IIx
106
Illumina Genome Analyzer
60
Illumina NextSeq 500
38
HiSeq HighOutput V4
22
Illumina Genome Analyzer II
16
Illumina Genome Analyzer IIe
8
HiSeq 1500
7
MiSeq
5
Illumina HiSeq X Ten
3
Illumina Genome Analyzer I
2
Applied Biosystems SOLiD System 3 Plus
Run type
916
single-ended
535
paired-ended
61
unknown
Read length (nt)
255
36
223
100
211
101
205
50
204
76
91
51
61
8
59
75
51
40
33
90
27
43
23
98
22
49
20
16
20
28
15
26
14
27
14
102
11
25
10
35
10
91
8
41
7
24
7
33
6
200
5
32
5
151
4
44
4
61
4
94
3
67
2
37
2
38
2
70
2
74
2
97
2
150
1
20
1
30
1
69
1
72
1
99
1
105
1
110
1
140
1
147
Mapped read length (nt)
5
50
4
36
2
51
Library insert size (nt)
112
>200
41
>100
15
225-275
1
150-250
1
>150
Library made from
2946
DNA
1947
RNA
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
July, 2025
Lab
3890
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Replication type
3437
unreplicated
822
isogenic
650
anisogenic
Audit category:
353
inconsistent ontology term
42
audit script error
28
inconsistent control
1
inconsistent replicate
Audit category:
85
missing controlled_by
Audit category:
56
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
month_released!
October, 2017
type!!!!
Pipeline
Showing 4 of 4909 results
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Experiment
DSR934CIK
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (39 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR345JBQ
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (66 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR694WFN
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (42 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR817LLE
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (53 years)
Lab:
KPMP
Project:
KPMP