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Clear Filters
Annotation type
  • 3variant allelic effects
  • 2target gene predictions
  • 1candidate regulatory elements
Annotation Category
  • 3Genetic variant effects
  • 2Target gene links
  • 1cis-regulatory elements
Annotation type Category
  • 3snATAC-seq
  • 2HiC
  • 1ChIP-seq
  • 1DNase-seq
Available data
  • 6bed bed3+
File set status
  • 6released
Genome assembly (visualization)
  • 6hg19
  • 2GRCh38
Organism
  • 6Homo sapiens
Biosample type
  • 3primary cell
  • 2cell line
  • 1tissue
Biosample term
  • 3enterocyte
  • 2HCT116
  • 1large intestine
Organ
  • 76epithelium
  • 51embryo
  • 51uterus
  • 29liver
  • 28blood
  • 28bodily fluid
  • 25pancreas
  • 18connective tissue
  • 17vasculature
  • 15blood vessel
  • 15musculature of body
  • 6intestine
  • 5heart
  • 3large intestine
  • 2adipose tissue
  • 2esophagus
  • 2stomach
  • 1adrenal gland
  • 1brain
  • 1bronchus
  • 1eye
  • 1kidney
  • 1lung
  • 1lymphoid tissue
  • 1mammary gland
  • 1prostate gland
  • 1skin of body
  • 1thyroid gland
Life stage
  • 1embryonic
Date released
  • 164September, 2022
  • 71February, 2021
  • 19November, 2021
  • 10June, 2020
  • 6February, 2024
  • 6May, 2021
  • 4August, 2017
  • 3January, 2022
  • 3March, 2024
  • 2March, 2020
  • 1October, 2022
Software used
  • 3deltasvm
  • 1r
Lab
  • 3AMP-T2D consortium
  • 3Bing Ren, UCSD
Project
  • 6AMP
Collection Tags
  • 3DGA
  • 24DN
  • 1EpiMap
RFA
  • 6AMP

Showing 6 of 6 results

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  • FileSet

    DSR311TAK

    released

    Annotation file set: Target gene predictions from Hi-C on HCT116. wild-type
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR162XYA

    released

    Annotation file set: Target gene predictions from Hi-C on HCT116. WAPL KD
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR069VJG

    released

    Annotation file set: Candidate regulatory elements for BSS01117 large intestine from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR972LVJ

    released

    Annotation file set: Variant allelic effects annotation of Enterocytes (sub-type3) from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
  • FileSet

    DSR623GGP

    released

    Annotation file set: Variant allelic effects annotation of Enterocytes (sub-type2) from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
  • FileSet

    DSR654PGN

    released

    Annotation file set: Variant allelic effects annotation of Enterocytes from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
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