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Clear Filters
Annotation type
  • 3Fine-mapped variants
  • 3target gene predictions
  • 2gene expression
  • 1binding sites
Annotation Category
  • 3Genetic variant effects
  • 3Target gene links
  • 2Gene expression levels
  • 1cis-regulatory elements
Annotation type Category
  • 5RNA-seq
  • 2HiC
  • 1ChIP-seq
  • 1pCHi-C
Available data
  • 5tsv
  • 4bed bed3+
File set status
  • 9released
Genome assembly (visualization)
  • 7hg19
  • 3GRCh38
Organism
  • 9Homo sapiens
Biosample type
  • 8tissue
  • 1cell line
Biosample term
  • 3body of pancreas
  • 3islet of Langerhans
  • 2pancreas
  • 1EndoC_BH1
Organ
  • 38brain
  • 15heart
  • 12blood vessel
  • 12vasculature
  • 10liver
  • 9connective tissue
  • 9limb
  • 9musculature of body
  • 9pancreas
  • 8adipose tissue
  • 6artery
  • 6epithelium
  • 3kidney
  • 3nerve
  • 3spinal cord
  • 2intestine
  • 1adrenal gland
  • 1embryo
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1ovary
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Life stage
  • 6adult
Date released
  • 47March, 2023
  • 44September, 2022
  • 33May, 2021
  • 31February, 2021
  • 25February, 2024
  • 20January, 2021
  • 18November, 2021
  • 9March, 2020
  • 8August, 2021
  • 7August, 2018
  • 6May, 2020
  • 6October, 2019
  • 4January, 2020
  • 4January, 2022
  • 4June, 2020
  • 3August, 2017
  • 2February, 2020
  • 2November, 2019
  • 1April, 2019
  • 1February, 2023
  • 1January, 2018
  • 1June, 2021
Software used
  • 2hiccups
  • 2r
  • 1gtex_finemapping_eQTL:caveman
  • 1gtex_finemapping_eQTL:caviar
  • 1gtex_finemapping_eQTL:dapg
  • 1nospecificsoft_customcode
  • 1spp
Lab
  • 8AMP-T2D consortium
  • 1Kyle Gaulton, UCSD
Project
  • 9AMP
Collection Tags
  • 8 T2DKP
  • 3DGA
  • 3GTEx
  • 2AMP
RFA
  • 9AMP

Showing 9 of 9 results

table-tab-iconmatrix-icon

  • FileSet

    DSR462PPV

    released

    Annotation file set: A target gene prediction annotation in pancreas of DSR905BNL Hi-C
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR373FUA

    released

    Annotation file set: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR304SKW

    released

    Annotation file set: A target gene prediction annotation in Human Pancreas of GSE86189 pCHi-C
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR157EWQ

    released

    Annotation file set: Fine-mapping results from DAPG of body of pancreas for GTEx V8
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR241RKE

    released

    Annotation file set: Fine-mapping results from CAVIAR of body of pancreas for GTEx V8
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR265ION

    released

    Annotation file set: Fine-mapping results from CaVEMaN of body of pancreas for GTEx V8
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR388BHU

    released

    Annotation file set: Gene expression levels of pancreatic islets (islet of Langerhans) for normal individuals from RNA-seq (SRP117935)
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR839IGA

    released

    Annotation file set: Gene expression levels of pancreatic islets (islet of Langerhans) for T2D individuals from RNA-seq (SRP117935)
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    TSTSR883333

    released

    Annotation file set: Islet TF binding sites (PDX, MAFB, NKX2.2, NKX6.1, FOXA2)
    Lab: Kyle Gaulton, UCSD
    Project: AMP
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