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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
gene expression
1
target gene predictions
Annotation Category
1
Gene expression levels
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
RNA-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
1
tsv
File set status
3
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
2
thyroid follicular cell
1
thyroid
Organ
129
epithelium
50
connective tissue
22
intestine
18
pancreas
13
musculature of body
12
skin of body
11
adrenal gland
11
stomach
10
heart
10
lung
8
large intestine
7
vasculature
6
esophagus
6
mammary gland
5
kidney
5
liver
4
blood vessel
4
eye
4
gonad
4
small intestine
4
uterus
3
extraembryonic component
3
lymphatic vessel
3
ovary
3
thyroid gland
2
bronchus
2
embryo
2
placenta
1
blood
1
bodily fluid
1
bone element
1
bone marrow
1
brain
1
breast
1
limb
1
lymphoid tissue
1
mouth
1
pituitary gland
1
prostate gland
1
spleen
1
testis
1
thymus
1
tongue
1
urinary bladder
1
vagina
1
vein
Life stage
1
adult
Date released
12
September, 2022
4
February, 2021
2
November, 2021
1
February, 2024
1
January, 2022
1
June, 2020
1
March, 2024
1
May, 2021
Software used
1
abc
1
macs
1
r
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
relevant_life_stage!
postnatal
Showing 3 of 3 results
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Download
FileSet
DSR125GEF
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Thyroid.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR121IWB
released
Annotation file set
: Target gene predictions of Thyroid Follicular Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR356XOM
released
Annotation file set
: Accessible chromatin annotation of Thyroid Follicular Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE