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Getting started
Schema
Clear Filters
Annotation type
139
target gene predictions
114
histone modifications
90
gene expression
26
accessible chromatin
5
chromatin state
5
hQTL
3
eQTL
3
meQTL
3
sQTL
1
other
Annotation Category
145
cis-regulatory elements
139
Target gene links
90
Gene expression levels
15
Genetic variant effects
Annotation type Category
165
ATAC-seq
139
DNase-seq
139
H3K27ac ChIP-Seq
125
ChIP-seq
82
RNA-seq
14
scRNA-seq
3
DNA methylation profiling by array assay
Available data
285
bed bed3+
88
tsv
13
bigWig
5
bed bed9
5
bigBed bed9
File set status
389
released
Genome assembly (visualization)
298
hg19
97
GRCh38
Organism
389
Homo sapiens
Biosample type
256
primary cell
63
cell line
39
in vitro differentiated cells
31
tissue
Biosample term
118
monocyte
34
CD8-positive, alpha-beta T cell
15
CD14-positive monocyte
15
EndoC_BH1
11
embryonic stem cell
10
pituitary stalk
6
dendritic cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neutrophil
4
adipocyte
3
B cell
3
islet of Langerhans
2
BJAB cell
2
CD4-positive helper T cell
2
Jurkat
2
MCF 10A cell
2
T follicular helper cell
2
T-cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
adrenal gland
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell
2
gamma-delta T cell
2
macrophage
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
regulatory T cell
2
stomach
2
trophoblast cell
1
A549
1
A673
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
HepG2
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
Schwann cell
1
activated pancreatic stellate cell
1
adipose tissue
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac fibroblast
1
cardiac muscle cell
1
cardiac muscle cell (pacemaker cell)
1
cardiac ventricle
1
cardiomyocytes (cardiac muscle cell)
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
cytotoxic T cell
1
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
erythroblast
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastrocnemius medialis
1
hematopoietic multipotent progenitor cell
1
hepatocyte
1
iPS DF 19.11
1
induced pluripotent stem cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
keratinocyte
1
large intestine
1
liver
1
mammary epithelial cell
1
mast cell
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal stem cell
1
mesendoderm
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
muscle of leg
1
muscle of trunk
1
myeloid dendritic cell
1
myotube
1
naive regulatory T cell
1
natural killer cell
1
neuronal stem cell
1
osteoblast
1
ovary
1
pancreas
1
pancreatic A cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic epsilon cell
1
pancreatic polypeptide-secreting cell
1
placenta
1
psoas muscle
1
quiescent pancreatic stellate cell
1
sigmoid colon
1
skeletal muscle myoblast
1
small intestine
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
stem cell
1
thymus
1
thyroid gland
1
transverse colon
1
type B pancreatic cell
1
uterus
1
white adipose tissue
Organ
34
epithelium
33
pancreas
16
connective tissue
11
brain
10
pituitary gland
7
embryo
6
intestine
6
musculature of body
5
large intestine
5
skin of body
4
blood
4
bodily fluid
4
heart
4
lung
3
adipose tissue
3
blood vessel
3
extraembryonic component
3
limb
3
liver
3
vasculature
2
adrenal gland
2
artery
2
mammary gland
2
prostate gland
2
stomach
2
uterus
1
breast
1
gonad
1
lymph node
1
ovary
1
penis
1
placenta
1
small intestine
1
spinal cord
1
spleen
1
thymus
1
thyroid gland
1
vein
Life stage
141
adult
18
newborn
Date released
2636
February, 2025
2590
February, 2021
2511
September, 2022
1984
July, 2026
389
May, 2021
373
February, 2024
333
November, 2021
320
May, 2026
289
June, 2020
286
September, 2023
155
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
101
October, 2022
89
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
146
macs
139
abc
90
r
15
limix
6
deseq2
6
samtools
5
chromhmm
3
minfi
3
sqtlseeker
Lab
250
AMP-T2D consortium
139
Jesse Engreitz, Stanford University
Project
389
AMP
Collection Tags
213
T1D
149
DGA
143
BLUEPRINT
35
T2DKP
27
AMP
12
ROADMAP
RFA
389
AMP
type!!!!
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Showing 3 of 389 results
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Download
FileSet
DSR019CTT
released
Annotation file set
: Histone modifications annotation for BLUEPRINT study. Naïve-Mf (culture for 6 days to macrophage)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR503VVK
released
Annotation file set
: Histone modifications annotation for BLUEPRINT study. Mono_1h_Naive (culture only, collected at 1 hour of exposure)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR472AWT
released
Annotation file set
: Histone modifications annotation for BLUEPRINT study. Mono_1h_LPS (LPS exposed, collected at 1 hour of exposure)
Lab:
AMP-T2D consortium
Project:
AMP