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Getting started
Schema
Clear Filters
Annotation type
2675
target gene predictions
2638
pQTL
1598
candidate regulatory elements
1055
accessible chromatin
929
histone modifications
872
chromatin state
801
binding sites
666
gene expression
466
differential activity
151
eQTL
123
variant allelic effects
38
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
5256
cis-regulatory elements
2995
Genetic variant effects
2675
Target gene links
1132
Gene expression levels
2
Others
Annotation type Category
4941
ChIP-seq
4032
DNase-seq
2638
quantitative proteomics
503
ATAC-seq
462
RNA-seq
460
snATAC-seq
305
single cell RNA-seq
189
HiC
147
scRNA-seq
128
H3K27ac ChIP-Seq
84
snDropSeq
45
pCHi-C
25
snRNA-seq
17
Expression arrays
4
RNA microarray
3
DNA methylation profiling by array assay
2
Capture-C
1
SNP-SELEX
Available data
7324
bed bed3+
3484
tsv
803
bed bed9
525
bigWig
112
txt
34
bed bed9+
34
bigBed bed9
26
csv
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
12058
released
1
archived
1
revoked
Genome assembly (visualization)
6579
hg19
3335
GRCh38
4
hg18
Organism
12013
Homo sapiens
Biosample type
5382
tissue
3702
primary cell
2469
cell line
502
in vitro differentiated cells
3
stem cell
Biosample term
2636
whole blood
135
monocyte
110
heart
107
stomach
95
kidney
93
fibroblast
85
endothelial cell
84
muscle of arm
82
lung
82
placenta
77
adrenal gland
76
A549
76
small intestine
73
CD8-positive, alpha-beta T cell
72
macrophage
71
muscle of leg
70
large intestine
69
muscle of back
68
HeLa-S3
68
T-cell
67
left lung
66
B cell
66
common myeloid progenitor, CD34-positive
66
smooth muscle cell
64
CD4-positive, alpha-beta T cell
57
thymus
56
right lung
55
hematopoietic multipotent progenitor cell
55
stimulated activated CD4-positive, alpha-beta T cell
54
H1-hESC
52
hepatocyte
52
right kidney
51
natural killer cell
51
neural progenitor cell
51
renal cortex interstitium
50
liver
50
renal pelvis
48
K562
46
adipocyte
45
T cell
45
islet of Langerhans
45
left kidney
44
heart left ventricle
43
retina
41
spinal cord
39
CD14-positive monocyte
39
spleen
38
cardiac muscle cell
37
CD4-positive, alpha-beta memory T cell
33
MCF-7
33
activated CD4-positive, alpha-beta T cell
33
keratinocyte
33
pericyte
32
T-helper 1 cell
31
adipose tissue
31
pancreatic ductal cell
30
pancreas
29
heart right ventricle
29
naive thymus-derived CD4-positive, alpha-beta T cell
29
ovary
28
T-helper 17 cell
28
body of pancreas
28
regulatory T cell
28
tibial nerve
28
trophoblast cell
26
CD8-positive, alpha-beta memory T cell
26
T-helper 2 cell
26
epithelial cell of proximal tubule
26
sigmoid colon
25
psoas muscle
25
stimulated activated CD8-positive, alpha-beta memory T cell
24
dendritic cell
24
endothelial cell of lymphatic vessel
24
foreskin keratinocyte
24
gastrocnemius medialis
24
pericyte cell
23
EndoC_BH1
23
H9
23
foreskin fibroblast
23
upper lobe of left lung
22
HCT116
22
endothelial cell of umbilical vein
22
glomerular endothelial cell
22
naive thymus-derived CD8-positive, alpha-beta T cell
22
thyroid gland
21
coronary artery
21
right atrium auricular region
21
testis
21
tibial artery
20
breast cancer cell
20
mesenchymal stem cell
20
mononuclear cell
20
muscle of trunk
20
pigmented layer of retina
20
subcutaneous adipose tissue
20
transverse colon
19
HFFc6
19
HepG2
19
astrocyte
19
endocardial cell
19
hepatic stellate cell
19
omental fat pad
18
ascending aorta
18
embryonic stem cell
18
mast cell
18
neuron
18
osteoblast
18
pancreatic beta cell
17
Peyer's patch
17
erythroblast
17
fibroblast of lung
17
pancreatic acinar cell
17
pancreatic alpha cell
16
GM12878
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
induced pluripotent stem cell
16
left renal cortex interstitium
16
left renal pelvis
16
skeletal muscle satellite cell
15
activated T-cell
15
bronchial epithelial cell
15
mammary epithelial cell
15
mammary gland epithelial cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
14
activated CD8-positive, alpha-beta memory T cell
14
aorta
14
endocrine pancreas
14
right renal pelvis
14
skeletal muscle tissue
13
breast epithelium
13
dermis blood vessel endothelial cell
13
excitatory neuron
13
fibroblast of dermis
13
glomerular visceral epithelial cell
13
left cardiac atrium
13
naive B cell
13
neutrophil
13
prostate gland
12
colonic mucosa
12
epithelial cell of prostate
12
lymphoblastoid cell line
12
neuroblastoma cell
12
neuronal stem cell
11
IMR-90
11
esophagus muscularis mucosa
11
kidney tubule cell
11
neurosphere
11
progenitor cell of endocrine pancreas
11
thoracic aorta
10
Rhabdomyosarcoma
10
endodermal cell
10
esophagus squamous epithelium
10
foreskin melanocyte
10
gastric cancer cell
10
inflammatory macrophage
10
limb
10
lymphocyte
10
mesothelial cell
10
right lobe of liver
10
thyroid follicular cell
9
22Rv1
9
GM06990
9
HAP-1
9
HT-29
9
PC-9
9
WERI-Rb-1
9
WI38
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
esophagus
9
eye
9
liposarcoma
9
lower leg skin
9
megakaryocyte
9
memory B cell
9
progenitor cell
9
tongue
9
vagina
8
B Cell
8
GM12864
8
GM12865
8
HEK293
8
LNCaP clone FGC
8
MM.1S
8
NAMALWA cell
8
OCI-LY7
8
T47D
8
colon epithelial cell
8
duodenal mucosa
8
epithelial cell of esophagus
8
fibroblast cell line
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
immortal human breast epithelial cell line cell
8
kidney glomerular epithelial cell
8
mesendoderm
Organ
3365
blood
2902
vasculature
2861
blood vessel
2853
bodily fluid
2659
vein
952
epithelium
brain
756
kidney
518
connective tissue
488
heart
440
lung
386
musculature of body
358
intestine
319
pancreas
296
skin of body
244
limb
240
liver
226
large intestine
215
embryo
174
extraembryonic component
161
eye
142
adipose tissue
140
stomach
111
muscle organ
106
bone element
104
mammary gland
102
adrenal gland
97
placenta
97
small intestine
93
thymus
93
uterus
88
artery
87
prostate gland
73
ureter
64
gonad
64
penis
63
spleen
62
lymph node
60
__MARKER__
49
spinal cord
48
esophagus
47
thyroid gland
32
ovary
31
testis
25
nerve
24
lymphoid tissue
24
skeleton
21
lymphatic vessel
21
mouth
16
bronchus
15
breast
13
bone marrow
13
pituitary gland
13
urinary bladder
12
tongue
12
vagina
5
trachea
4
nose
1
embryonic structure
1
gallbladder
1
pericardium
Life stage
4862
adult
1325
embryonic
449
unknown
413
fetal
91
child
75
newborn
30
postnatal
25
young adult
Date released
2635
February, 2025
2480
February, 2021
2331
September, 2022
1566
July, 2026
378
May, 2021
372
February, 2024
333
November, 2021
302
May, 2026
283
September, 2023
268
June, 2020
136
May, 2020
128
August, 2021
95
October, 2022
90
March, 2020
88
January, 2022
70
March, 2023
60
January, 2020
56
January, 2021
49
May, 2022
46
February, 2020
44
November, 2022
40
May, 2024
33
July, 2025
32
February, 2023
29
August, 2017
29
March, 2024
19
April, 2020
14
October, 2019
13
November, 2019
9
August, 2018
8
April, 2019
5
May, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2460
macs
2247
r
957
chromhmm
787
encode-ccres
239
abc
122
qTLtools
119
deltasvm
117
deseq2
36
cicero
25
nospecificsoft_customcode
25
seurat
24
chicago
18
samtools
15
limix
14
hiccups
14
matrix-eQTL
12
deeptools
12
gtex_eqtl:V8
12
gtex_finemapping_eQTL:caveman
12
gtex_finemapping_eQTL:caviar
12
gtex_finemapping_eQTL:dapg
12
umitools
11
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
10547
AMP-T2D consortium
484
Kyle Gaulton, UCSD
393
Bing Ren, UCSD
281
KPMP
128
Jesse Engreitz, Stanford University
92
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
5
ITG
5
Patrick T. Ellinor, Broad
5
Struan F.A. Grant, CHOP
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
Project
11345
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
17
community
5
ITG
Collection Tags
2635
UK_Biobank
2319
EpiMap
1769
ChIP-Atlas
1209
ENCODE-rE2G
904
ENCODE
613
DGA
529
AMP
406
T2DKP
404
T1D
357
HDMA
302
pyxis
281
KPMP
219
BLUEPRINT
174
T2DKP
174
4DN
100
CMDGA
94
T2D
90
GTEx
84
eQTLCatalogue
67
HPAP
26
FNIH_projects-heart
12
FNIH_projects-liver
12
ROADMAP
RFA
11152
AMP
333
ENCODE3
281
KPMP
193
AMP2
60
T1D
19
LungMap2
17
community
5
ITG
organ_slims!
brain
type!!
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