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Schema
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Assay category
1395
DNA binding
1395
Transcription
584
DNA accessibility
75
DNA methylation
26
3D chromatin structure
1
DNA sequencing
Assay
1395
ChIP-seq
1131
total RNA-seq
360
ATAC-seq
244
single cell RNA-seq
157
DNase-seq
75
RNA microarray
64
snATAC-seq
59
WGBS
41
pCHi-C
26
Hi-C
16
small RNA-seq
15
RRBS
5
GRO-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
MeRIP-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3190
AMP
191
T1D
174
HPAP
40
KPMP
15
LungMap
4
community
1
ITG
RFA
3033
AMP
191
T1D
174
HPAP
157
AMP2
40
KPMP
15
LungMap2
4
community
1
ITG
Experiment status
3614
released
1
archived
Genome assembly (visualization)
2337
hg19
2287
GRCh38
5
hg18
Organism
3601
Homo sapiens
Target of assay
745
histone modification
744
histone
399
transcription factor
380
narrow histone mark
363
broad histone mark
251
control
90
RNA binding protein
75
recombinant protein
25
chromatin remodeller
4
other context
4
other post-translational modification
2
nucleotide modification
Biosample type
2255
tissue
591
primary cell
458
cell line
303
in vitro differentiated cells
8
stem cell
Organ
758
pancreas
634
liver
547
connective tissue
384
adipose tissue
epithelium
323
heart
286
kidney
237
brain
191
vasculature
187
blood vessel
140
bone element
113
artery
102
limb
83
musculature of body
52
blood
52
bodily fluid
47
eye
36
nerve
30
embryo
21
vein
18
spleen
16
skeleton
16
ureter
15
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Life stage
2205
adult
636
unknown
392
child
356
embryonic
21
newborn
Available data
2467
bam
2305
bigWig
1338
bed narrowPeak
1172
tsv
885
fastq
775
bigBed narrowPeak
315
tagAlign
241
bed broadPeak
213
bigBed broadPeak
210
bed bed3+
136
txt
54
zippedFastqFolder
53
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
hic
16
bedpe bed3+
11
bed bed3
7
csv
6
bed bedgraph
3
hdf5
3
tar
1
bedpe
1
ibed
1
tbi
1
vcf
Platform
387
Illumina HiSeq 2000
109
Illumina HiSeq 2500
107
Illumina HiSeq 4000
97
Illumina Genome Analyzer IIx
93
Illumina NovaSeq 6000
87
Illumina Genome Analyzer
18
Illumina Genome Analyzer II
14
Illumina Genome Analyzer IIe
12
Illumina NextSeq 500
8
HiSeq HighOutput V4
7
HiSeq 1500
6
MiSeq
4
Illumina HiSeq X Ten
3
Illumina Genome Analyzer I
2
Applied Biosystems SOLiD System 3 Plus
Run type
602
single-ended
337
paired-ended
53
unknown
Read length (nt)
188
36
149
100
148
76
123
101
122
50
53
8
52
51
43
40
25
90
22
98
19
49
19
75
18
28
16
16
14
26
10
27
9
35
9
43
8
91
6
25
6
33
5
24
4
32
4
61
4
94
4
151
4
200
3
67
2
37
2
38
2
150
1
20
1
70
1
72
1
97
1
105
1
125
Mapped read length (nt)
3
36
3
50
2
51
Library insert size (nt)
83
>200
13
225-275
11
>100
1
150-250
1
>150
Library made from
2185
DNA
1416
RNA
Date released
557
February, 2021
324
November, 2017
321
August, 2017
300
May, 2021
281
May, 2020
257
August, 2021
222
October, 2019
164
June, 2019
131
February, 2023
127
May, 2022
102
July, 2018
88
May, 2019
81
July, 2019
70
November, 2018
65
April, 2019
59
October, 2018
54
December, 2017
45
March, 2020
40
September, 2023
36
February, 2018
36
September, 2020
35
May, 2024
35
November, 2019
24
January, 2019
23
December, 2018
19
February, 2020
19
October, 2017
15
April, 2020
15
May, 2023
13
January, 2021
10
April, 2018
9
September, 2018
8
November, 2020
7
January, 2018
5
March, 2019
5
March, 2023
5
September, 2017
3
December, 2019
2
June, 2018
1
August, 2022
1
July, 2025
1
October, 2022
Lab
2875
AMP-T2D consortium
273
Kyle Gaulton, UCSD
174
Klaus Kaestner, Upenn
119
Katalin Susztak, Upenn
40
KPMP
35
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
31
Bing Ren, UCSD
15
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
2
Stephen Parker, UMich
1
ITG
1
Maike Sander, UCSD
Replication type
2545
unreplicated
597
isogenic
473
anisogenic
Audit category:
222
inconsistent ontology term
30
audit script error
20
inconsistent control
1
inconsistent replicate
Audit category:
53
missing controlled_by
Audit category:
41
inconsistent control read length
4
inconsistent control run_type
3
inconsistent assembly
organ_slims!
epithelium
type!
Target
Showing 7 of 3615 results
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Experiment
DSR682903
released
snATAC-seq
of skeletal muscle tissue
Lab:
Stephen Parker, UMich
Project:
AMP
Experiment
DSR671IKH
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (47 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR060QKS
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (49 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR693VEQ
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (35 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR334WYK
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (53 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR537GNU
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (66 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR706HXH
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (77 years)
Lab:
KPMP
Project:
KPMP