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Getting started
Schema
Clear Filters
Annotation type
2922
target gene predictions
2638
pQTL
1640
candidate regulatory elements
1238
accessible chromatin
972
histone modifications
908
chromatin state
811
binding sites
683
gene expression
484
differential activity
178
eQTL
141
variant allelic effects
74
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
5570
cis-regulatory elements
3076
Genetic variant effects
2922
Target gene links
1167
Gene expression levels
2
Others
Annotation type Category
5099
ChIP-seq
4356
DNase-seq
2638
quantitative proteomics
542
RNA-seq
507
ATAC-seq
457
snATAC-seq
305
single cell RNA-seq
187
HiC
147
scRNA-seq
134
H3K27ac ChIP-Seq
84
snDropSeq
46
pCHi-C
25
snRNA-seq
17
Expression arrays
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
7877
bed bed3+
3549
tsv
836
bed bed9
543
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
26
csv
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
12735
released
1
archived
1
revoked
Genome assembly (visualization)
6832
hg19
3810
GRCh38
4
hg18
Organism
12689
Homo sapiens
Biosample type
5789
tissue
3927
primary cell
2501
cell line
514
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
135
monocyte
110
heart
107
stomach
95
kidney
93
fibroblast
91
endothelial cell
89
brain
86
head of caudate nucleus
84
muscle of arm
82
lung
82
placenta
77
adrenal gland
76
A549
76
small intestine
74
macrophage
73
CD8-positive, alpha-beta T cell
71
muscle of leg
70
smooth muscle cell
69
muscle of back
68
HeLa-S3
68
T-cell
67
left lung
66
B cell
66
common myeloid progenitor, CD34-positive
64
CD4-positive, alpha-beta T cell
59
dorsolateral prefrontal cortex
57
thymus
56
right lung
55
hematopoietic multipotent progenitor cell
55
stimulated activated CD4-positive, alpha-beta T cell
54
H1-hESC
52
hepatocyte
52
neural progenitor cell
52
right kidney
51
natural killer cell
51
renal cortex interstitium
50
liver
50
renal pelvis
48
K562
48
posterior cingulate gyrus
46
adipocyte
45
T cell
45
islet of Langerhans
45
left kidney
44
heart left ventricle
43
retina
41
spinal cord
39
CD14-positive monocyte
39
spleen
38
cardiac muscle cell
37
CD4-positive, alpha-beta memory T cell
33
MCF-7
33
activated CD4-positive, alpha-beta T cell
33
keratinocyte
32
T-helper 1 cell
32
glutamatergic neuron
32
pericyte
31
adipose tissue
31
astrocyte
31
pancreatic ductal cell
29
heart right ventricle
29
ovary
28
T-helper 17 cell
28
body of pancreas
28
pancreas
28
regulatory T cell
28
tibial nerve
28
trophoblast cell
27
naive thymus-derived CD4-positive, alpha-beta T cell
26
CD8-positive, alpha-beta memory T cell
26
T-helper 2 cell
26
epithelial cell of proximal tubule
25
psoas muscle
25
stimulated activated CD8-positive, alpha-beta memory T cell
24
dendritic cell
24
endothelial cell of lymphatic vessel
24
foreskin keratinocyte
24
gastrocnemius medialis
24
neuron
24
pericyte cell
23
EndoC_BH1
23
H9
23
caudate nucleus
23
foreskin fibroblast
23
upper lobe of left lung
22
GABAergic neuron
22
endothelial cell of umbilical vein
22
glomerular endothelial cell
22
thyroid gland
21
coronary artery
21
right atrium auricular region
21
testis
21
tibial artery
20
breast cancer cell
20
mesenchymal stem cell
20
mononuclear cell
20
naive thymus-derived CD8-positive, alpha-beta T cell
20
subcutaneous adipose tissue
19
HFFc6
19
HepG2
19
endocardial cell
19
hepatic stellate cell
19
omental fat pad
18
ascending aorta
18
embryonic stem cell
18
muscle of trunk
18
pancreatic beta cell
17
Peyer's patch
17
erythroblast
17
fibroblast of lung
17
frontal cortex
16
GM12878
16
cerebellum
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
induced pluripotent stem cell
16
mast cell
16
pigmented layer of retina
16
skeletal muscle satellite cell
16
substantia nigra
15
activated T-cell
15
bronchial epithelial cell
15
mammary epithelial cell
15
pancreatic acinar cell
15
pancreatic alpha cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
14
activated CD8-positive, alpha-beta memory T cell
14
aorta
14
endocrine pancreas
14
layer of hippocampus
14
left renal cortex interstitium
14
osteoblast
14
right renal pelvis
14
skeletal muscle tissue
13
breast epithelium
13
dermis blood vessel endothelial cell
13
excitatory neuron
13
fibroblast of dermis
13
glomerular visceral epithelial cell
13
left cardiac atrium
13
mammary gland epithelial cell
13
naive B cell
13
prostate gland
12
Ammon's horn
12
SK-N-DZ
12
epithelial cell of prostate
12
left renal pelvis
12
lymphoblastoid cell line
11
IMR-90
11
SK-N-SH
11
choroid plexus epithelial cell
11
esophagus muscularis mucosa
11
kidney tubule cell
11
neuronal stem cell
11
neurosphere
11
neutrophil
11
progenitor cell of endocrine pancreas
11
putamen
11
thoracic aorta
10
Rhabdomyosarcoma
10
endodermal cell
10
esophagus squamous epithelium
10
foreskin melanocyte
10
gastric cancer cell
10
inflammatory macrophage
10
limb
10
neuroblastoma cell
10
thyroid follicular cell
9
22Rv1
9
GM06990
9
HAP-1
9
PC-9
9
SK-N-MC
9
WERI-Rb-1
9
WI38
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
esophagus
9
eye
9
globus pallidus
9
lower leg skin
9
progenitor cell
9
temporal lobe
9
tongue
8
B Cell
8
GM12864
8
GM12865
8
HEK293
8
LNCaP clone FGC
8
MM.1S
8
NAMALWA cell
8
OCI-LY7
8
T47D
8
cingulate gyrus
8
duodenal mucosa
8
epithelial cell of esophagus
Organ
3365
blood
2902
vasculature
2861
blood vessel
2853
bodily fluid
2659
vein
952
epithelium
903
brain
756
kidney
518
connective tissue
488
heart
440
lung
386
musculature of body
358
intestine
319
pancreas
296
skin of body
244
limb
240
liver
large intestine
215
embryo
174
extraembryonic component
161
eye
142
adipose tissue
140
stomach
111
muscle organ
106
bone element
104
mammary gland
102
adrenal gland
97
placenta
97
small intestine
93
thymus
93
uterus
88
artery
87
prostate gland
73
ureter
64
gonad
64
penis
63
spleen
62
lymph node
60
__MARKER__
49
spinal cord
48
esophagus
47
thyroid gland
32
ovary
31
testis
25
nerve
24
lymphoid tissue
24
skeleton
21
lymphatic vessel
21
mouth
16
bronchus
15
breast
13
bone marrow
13
pituitary gland
13
urinary bladder
12
tongue
12
vagina
5
trachea
4
nose
1
embryonic structure
1
gallbladder
1
pericardium
Life stage
4994
adult
1333
embryonic
464
unknown
458
fetal
112
child
75
newborn
31
young adult
30
postnatal
Date released
2636
February, 2025
2544
February, 2021
2413
September, 2022
1932
July, 2026
384
May, 2021
370
February, 2024
327
November, 2021
320
May, 2026
286
September, 2023
282
June, 2020
155
May, 2020
128
August, 2021
127
March, 2020
104
January, 2022
100
October, 2022
89
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
40
May, 2024
33
July, 2025
32
August, 2017
32
February, 2023
28
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2538
macs
2318
r
998
chromhmm
802
encode-ccres
242
abc
137
qTLtools
136
deltasvm
117
deseq2
36
cicero
27
chicago
26
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
14
matrix-eQTL
12
deeptools
12
umitools
11
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
11200
AMP-T2D consortium
502
Kyle Gaulton, UCSD
387
Bing Ren, UCSD
281
KPMP
134
Jesse Engreitz, Stanford University
95
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
Project
12028
AMP
327
ENCODE
281
KPMP
60
T1D
19
LungMap
17
community
5
ITG
Collection Tags
2635
UK_Biobank
2400
EpiMap
1831
ChIP-Atlas
1406
ENCODE-rE2G
929
ENCODE
640
DGA
528
AMP
419
T1D
400
T2DKP
393
HDMA
320
pyxis
281
KPMP
219
BLUEPRINT
174
T2DKP
172
4DN
149
GTEx
133
CATlas
109
T2D
100
CMDGA
99
eQTLCatalogue
67
HPAP
26
FNIH_projects-heart
12
FNIH_projects-liver
12
ROADMAP
RFA
11832
AMP
327
ENCODE3
281
KPMP
196
AMP2
60
T1D
19
LungMap2
17
community
5
ITG
organ_slims!
large intestine
type!!
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