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Embeddings type
  • 27Gene expression
  • 5Accessible chromatin
Cohort
  • 1HPAP
Embeddings Category
  • 32umap
Underlying Assay
  • 2210X scRNA-seq
  • 18Smart-seq
  • 410X snRNA-seq
  • 310X snATAC-seq
  • 110X scATAC-seq
  • 1sciATAC-seq
Available data
  • 28h5ad
  • 5mtx
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  • 2rds
File set status
  • 32released
Organism
  • 29Homo sapiens
Biosample type
  • 29tissue
  • 4primary cell
Biosample term
  • 5islet of Langerhans
  • 3heart
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Tissue term
  • 7pancreas
  • 3heart
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  • 1large intestine
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  • 1prostate gland
  • 1small intestine
  • 1spleen
  • 1stromal cell
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  • 1vasculature
Organ
  • 7pancreas
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  • 2connective tissue
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  • 2musculature of body
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  • 1bone marrow
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  • 1eye
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  • 1lymph node
  • 1mouth
  • 1prostate gland
  • 1small intestine
  • 1spleen
  • 1thymus
  • 1tongue
  • 1trachea
  • 1uterus
  • 1vasculature
Life stage
  • 20adult
Date released
  • 21May, 2022
  • 2October, 2024
  • 2September, 2021
  • 1August, 2021
  • 1February, 2021
  • 1February, 2023
  • 1June, 2025
  • 1March, 2023
  • 1March, 2024
  • 1September, 2020
Software used
  • 1r
Lab
  • 23AMP-T2D consortium
  • 5Kyle Gaulton, UCSD
  • 2Franck Mauvais-Jarvis Lab
  • 2Xin Sun, UCSD
Project
  • 27AMP
  • 2LungMap
  • 2community
  • 1T1D
RFA
  • 26AMP
  • 2LungMap2
  • 2community
  • 1AMP2
  • 1T1D
organ_slims!
  • liver
type!!
  • Experiment

Showing 7 of 32 results

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  • FileSet

    DSR445357

    released

    Embeddings file set: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.
    Lab: Kyle Gaulton, UCSD
    Project: AMP
  • FileSet

    DSR205VNM

    released

    Embeddings file set: The human cell atlas of Prostate from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR612IYX

    released

    Embeddings file set: The human cell atlas of Pancreas from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR461STO

    released

    Embeddings file set: The human cell atlas of Fat from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR447NJX

    released

    Embeddings file set: The human cell atlas of Bladder from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR996NUW

    released

    Embeddings file set: The human cell atlas of all immune cells from 24 organs of 15 normal human subjects (22-74 years old) from Tabula Sapiens.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR988JIN

    released

    Embeddings file set: The human cell atlas of epithelial cells from 24 organs of 15 normal human subjects (22-74 years old) from Tabula Sapiens.
    Lab: AMP-T2D consortium
    Project: AMP
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