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Embeddings type
38
Gene expression
9
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
47
umap
Underlying Assay
32
10X scRNA-seq
27
Smart-seq
5
10X snATAC-seq
4
10X snRNA-seq
2
sciATAC-seq
1
10X scATAC-seq
Available data
42
h5ad
7
mtx
5
tsv
4
rds
1
bed bed3
1
cloupe
1
tbi
File set status
47
released
Genome assembly (visualization)
1
hg19
Organism
43
Homo sapiens
Biosample type
41
tissue
7
primary cell
Biosample term
6
islet of Langerhans
4
heart
4
pancreas
3
lung
2
kidney
2
peripheral blood mononuclear cell
2
skeletal muscle
2
skeletal muscle tissue
1
bladder organ
1
blood
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
immune system
1
large intestine
1
liver
1
lymph node
1
major salivary gland
1
muscle organ
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
Tissue term
8
pancreas
4
heart
4
skeletal muscle tissue
3
blood
3
lung
2
kidney
1
bladder organ
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
large intestine
1
leukocyte
1
liver
1
lymph node
1
major salivary gland
1
muscle organ
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
Organ
8
pancreas
5
musculature of body
3
blood
3
bodily fluid
3
heart
3
lung
2
bone element
2
connective tissue
2
epithelium
2
intestine
2
kidney
2
mouth
1
adipose tissue
1
bone marrow
1
eye
1
large intestine
1
liver
1
lymph node
mammary gland
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
thymus
1
tongue
1
trachea
1
uterus
1
vasculature
Life stage
32
adult
Date released
31
May, 2022
2
August, 2021
2
July, 2025
2
October, 2024
2
September, 2021
1
February, 2021
1
February, 2023
1
June, 2025
1
March, 2023
1
March, 2024
1
November, 2021
1
September, 2020
1
September, 2023
Software used
1
cellranger-atac
1
r
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
34
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Franck Mauvais-Jarvis Lab
2
Stephen Parker, UMich
2
Xin Sun, UCSD
1
Bing Ren, UCSD
Project
40
AMP
2
LungMap
2
T1D
2
community
1
ENCODE
RFA
37
AMP
3
AMP2
2
LungMap2
2
T1D
2
community
1
ENCODE3
organ_slims!
mammary gland
tissue_term_name!!
blood
Showing 3 of 47 results
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FileSet
DSR445357
released
Embeddings file set
: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR205VNM
released
Embeddings file set
: The human cell atlas of Prostate from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR612IYX
released
Embeddings file set
: The human cell atlas of Pancreas from 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP