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Annotation type
4
caQTL
Annotation Category
4
Genetic variant effects
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
1
endothelial cell
1
liver
1
mesenchymal stem cell
1
smooth muscle cell
Organ
musculature of body
1
connective tissue
1
epithelium
1
liver
Date released
3
October, 2022
1
May, 2022
Software used
2506
macs
2239
r
960
chromhmm
760
encode-ccres
241
abc
141
qTLtools
130
deseq2
129
deltasvm
32
cicero
27
chicago
26
nospecificsoft_customcode
25
seurat
22
gtex_eqtl:V8
22
gtex_finemapping_eQTL:caveman
22
gtex_finemapping_eQTL:caviar
22
gtex_finemapping_eQTL:dapg
15
limix
13
matrix-eQTL
13
samtools
12
hiccups
9
rasqual
9
salmon
8
fastqtl
7
deeptools
7
umitools
5
peer
5
unknown
4
eigenmt
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Lab
3
Stephen Parker, UMich
1
Karen Mohlke, UNC
Project
4
AMP
Collection Tags
4
DGA
3
T2DKP
1
AMP
RFA
3
AMP2
1
AMP
organ_slims!
musculature of body
Showing 4 of 4 results
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Download
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR375CST
released
Annotation file set
: Chromatin site QTLs of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP